Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACGH52_RS13555 Genome accession   NZ_CP172447
Coordinates   2995057..2995662 (-) Length   201 a.a.
NCBI ID   WP_059302418.1    Uniprot ID   -
Organism   Streptomyces sp. BBFR25     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2990057..3000662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGH52_RS13540 (ACGH52_13540) - 2991754..2992740 (+) 987 WP_076974313.1 hypothetical protein -
  ACGH52_RS13545 (ACGH52_13545) clpX 2992818..2994104 (-) 1287 WP_076974314.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACGH52_RS13550 (ACGH52_13550) clpP 2994296..2995006 (-) 711 WP_076974315.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACGH52_RS13555 (ACGH52_13555) clpP 2995057..2995662 (-) 606 WP_059302418.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACGH52_RS13560 (ACGH52_13560) tig 2995984..2997390 (-) 1407 WP_399939343.1 trigger factor -
  ACGH52_RS13575 (ACGH52_13575) - 2998001..2998195 (-) 195 WP_059302352.1 hypothetical protein -
  ACGH52_RS13580 (ACGH52_13580) - 2998896..3000062 (+) 1167 WP_210977292.1 acyltransferase family protein -
  ACGH52_RS13585 (ACGH52_13585) - 3000073..3000561 (-) 489 WP_399939346.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21246.12 Da        Isoelectric Point: 4.6747

>NTDB_id=953901 ACGH52_RS13555 WP_059302418.1 2995057..2995662(-) (clpP) [Streptomyces sp. BBFR25]
MPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLASDPDKDIFLYINSPGGSITAGMAIYDTMQY
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTIE
QITRDSDRDRWFDAFEAKEYGLIDDVIATAAGMPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=953901 ACGH52_RS13555 WP_059302418.1 2995057..2995662(-) (clpP) [Streptomyces sp. BBFR25]
ATGCCCTCAGCCGCCGGCGAGCCCTCTATCGGTGGCGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATTGCGAACAAGATCACCGCACAGCTGCTGCTCCTTGCCTCCGACCCGG
ACAAGGACATCTTCCTGTACATCAACAGCCCGGGCGGTTCGATCACGGCCGGTATGGCGATCTACGACACCATGCAGTAC
ATCAAGAACGACGTGGTGACGATCGCGATGGGTCTCGCGGCCTCCATGGGGCAGTTCCTGCTCAGCGCGGGCACCCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTCGCCGGTTCGGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTGACCTCCCAGCACACCGGCCAGACGATCGAG
CAGATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTCAT
CGCCACGGCCGCCGGCATGCCGGGCGGCGGCGGCACGGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

57.895

85.075

0.493
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.846

90.547

0.488
  clpP Lactococcus lactis subsp. cremoris KW2

52.717

91.542

0.483
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.174

91.542

0.478
  clpP Streptococcus mutans UA159

55.491

86.07

0.478
  clpP Streptococcus pyogenes MGAS315

52.601

86.07

0.453
  clpP Streptococcus pyogenes JRS4

52.601

86.07

0.453
  clpP Streptococcus thermophilus LMG 18311

50.857

87.065

0.443
  clpP Streptococcus thermophilus LMD-9

50.857

87.065

0.443
  clpP Streptococcus pneumoniae Rx1

50.286

87.065

0.438
  clpP Streptococcus pneumoniae D39

50.286

87.065

0.438
  clpP Streptococcus pneumoniae R6

50.286

87.065

0.438
  clpP Streptococcus pneumoniae TIGR4

50.286

87.065

0.438