Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACGH52_RS13550 Genome accession   NZ_CP172447
Coordinates   2994296..2995006 (-) Length   236 a.a.
NCBI ID   WP_076974315.1    Uniprot ID   -
Organism   Streptomyces sp. BBFR25     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2989296..3000006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGH52_RS13540 (ACGH52_13540) - 2991754..2992740 (+) 987 WP_076974313.1 hypothetical protein -
  ACGH52_RS13545 (ACGH52_13545) clpX 2992818..2994104 (-) 1287 WP_076974314.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACGH52_RS13550 (ACGH52_13550) clpP 2994296..2995006 (-) 711 WP_076974315.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACGH52_RS13555 (ACGH52_13555) clpP 2995057..2995662 (-) 606 WP_059302418.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACGH52_RS13560 (ACGH52_13560) tig 2995984..2997390 (-) 1407 WP_399939343.1 trigger factor -
  ACGH52_RS13575 (ACGH52_13575) - 2998001..2998195 (-) 195 WP_059302352.1 hypothetical protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26194.66 Da        Isoelectric Point: 4.6559

>NTDB_id=953900 ACGH52_RS13550 WP_076974315.1 2994296..2995006(-) (clpP) [Streptomyces sp. BBFR25]
MNDFPGSGLYDRMNATQDMRAASQGRYTGPQAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMA
QLLCLESMDPDRDISVYINSPGGSFTALTAIYDTMQYVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPY
SETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPVEKIREDIERDKILTAEDALSYGLIDQIITTRKMDNSSLR

Nucleotide


Download         Length: 711 bp        

>NTDB_id=953900 ACGH52_RS13550 WP_076974315.1 2994296..2995006(-) (clpP) [Streptomyces sp. BBFR25]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCATGAACGCCACGCAGGACATGCGCGCCGCCTCCCAGGGCCGCTA
CACCGGCCCGCAGGCCGAGTCCCGCTACGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACC
CGTACGCGAAGCTCTTCGAGGAGCGGGTGATCTTCCTCGGCGTCCAGATCGACGACGCCTCGGCCAACGACGTCATGGCG
CAGCTGCTGTGCCTGGAGTCGATGGACCCCGACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACCGC
GCTCACGGCCATCTACGACACGATGCAGTACGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCCGCCTCCGCCG
CCGCCGTCCTGCTGGCCGCCGGTACGCCGGGCAAGCGCATGGCGCTGCCGAACGCCCGCGTCCTGATCCACCAGCCGTAC
AGCGAGACCGGCCGCGGTCAGGTCTCCGACCTGGAGATCGCCGCCAACGAGATCCTCCGGATGCGCTCGCAGCTGGAGGA
GATGCTGGCCAAGCACTCCACCACGCCGGTCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGG
ACGCGCTGAGCTACGGCCTGATCGACCAGATCATCACCACCCGGAAGATGGACAACTCCTCTCTCCGCTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(47-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

80.508

0.424
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.064

79.661

0.407
  clpP Streptococcus mutans UA159

44.39

86.864

0.386
  clpP Streptococcus pyogenes JRS4

44.776

85.169

0.381
  clpP Streptococcus pyogenes MGAS315

44.776

85.169

0.381
  clpP Lactococcus lactis subsp. cremoris KW2

44.554

85.593

0.381
  clpP Streptococcus thermophilus LMG 18311

45.641

82.627

0.377
  clpP Streptococcus thermophilus LMD-9

45.641

82.627

0.377
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.564

85.593

0.373
  clpP Streptococcus pneumoniae Rx1

44.388

83.051

0.369
  clpP Streptococcus pneumoniae D39

44.388

83.051

0.369
  clpP Streptococcus pneumoniae R6

44.388

83.051

0.369
  clpP Streptococcus pneumoniae TIGR4

44.388

83.051

0.369