Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACGH2B_RS19245 Genome accession   NZ_CP172415
Coordinates   4741293..4741970 (+) Length   225 a.a.
NCBI ID   WP_399091015.1    Uniprot ID   -
Organism   Streptomyces sp. BBFR2     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4736293..4746970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGH2B_RS19215 (ACGH2B_19215) - 4737610..4737804 (+) 195 WP_030283919.1 hypothetical protein -
  ACGH2B_RS19220 (ACGH2B_19220) - 4737898..4738284 (-) 387 WP_399091009.1 arsenate reductase family protein -
  ACGH2B_RS19235 (ACGH2B_19235) tig 4738946..4740337 (+) 1392 WP_399091012.1 trigger factor -
  ACGH2B_RS19240 (ACGH2B_19240) clpP 4740623..4741225 (+) 603 WP_399097122.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACGH2B_RS19245 (ACGH2B_19245) clpP 4741293..4741970 (+) 678 WP_399091015.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACGH2B_RS19250 (ACGH2B_19250) clpX 4742129..4743412 (+) 1284 WP_399091018.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACGH2B_RS19255 (ACGH2B_19255) - 4743488..4744435 (-) 948 WP_399091021.1 hypothetical protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24595.87 Da        Isoelectric Point: 4.4263

>NTDB_id=953601 ACGH2B_RS19245 WP_399091015.1 4741293..4741970(+) (clpP) [Streptomyces sp. BBFR2]
MNNFPGSGLYQGAESEFSGPRAESRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGPGQVSD
LEIAANEILRMRSQLEDLLAKHSSTPIEKIRDDIERDKILTAEEALAYGLVDEIVATRKSSVSMG

Nucleotide


Download         Length: 678 bp        

>NTDB_id=953601 ACGH2B_RS19245 WP_399091015.1 4741293..4741970(+) (clpP) [Streptomyces sp. BBFR2]
ATGAACAACTTCCCCGGCAGCGGCCTGTACCAGGGCGCCGAGTCCGAGTTTTCCGGCCCGCGCGCCGAGTCCCGTTACAT
CGTTCCGCGTTTCGTCGAGCGCACCTCGCAGGGCGTGCGGGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGGGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCGTCGGCCAACGACGTCATGGCGCAGCTCCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGATCTACATCAACTCCCCGGGCGGCTCCTTCACGGCGCTCACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCCGACATCCAGACGGTCTGCATGGGCCAGGCGGCGTCCGCCGCCGCCGTGCTGCTCGCCGCCGGCACCCCCG
GCAAGCGGATGGCGCTGCCCAACGCCCGCGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCCCGGCCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTGCGGATGCGTTCGCAGCTCGAGGACCTGCTGGCCAAGCACTCCTCGACCCCGAT
CGAGAAGATCCGGGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGAGGCCCTGGCGTACGGTCTGGTCGACGAGA
TCGTGGCGACGCGCAAGTCGTCGGTCTCGATGGGTTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.852

84

0.436
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.936

83.556

0.409
  clpP Streptococcus pyogenes MGAS315

46.842

84.444

0.396
  clpP Streptococcus pyogenes JRS4

46.842

84.444

0.396
  clpP Streptococcus thermophilus LMD-9

45.876

86.222

0.396
  clpP Streptococcus mutans UA159

45.876

86.222

0.396
  clpP Streptococcus thermophilus LMG 18311

45.876

86.222

0.396
  clpP Streptococcus pneumoniae Rx1

45.596

85.778

0.391
  clpP Streptococcus pneumoniae D39

45.596

85.778

0.391
  clpP Streptococcus pneumoniae R6

45.596

85.778

0.391
  clpP Streptococcus pneumoniae TIGR4

45.596

85.778

0.391
  clpP Lactococcus lactis subsp. cremoris KW2

46.073

84.889

0.391
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

84.889

0.382