NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	ACGH2B_RS19240	Genome accession	NZ_CP172415
Coordinates	4740623..4741225 (+)	Length	200 a.a.
NCBI ID	WP_399097122.1	Uniprot ID	-
Organism	Streptomyces sp. BBFR2
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4735623..4746225

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACGH2B_RS19210 (ACGH2B_19210)	-	4735682..4736911 (-)	1230	WP_399091006.1	acyltransferase family protein	-
ACGH2B_RS19215 (ACGH2B_19215)	-	4737610..4737804 (+)	195	WP_030283919.1	hypothetical protein	-
ACGH2B_RS19220 (ACGH2B_19220)	-	4737898..4738284 (-)	387	WP_399091009.1	arsenate reductase family protein	-
ACGH2B_RS19235 (ACGH2B_19235)	tig	4738946..4740337 (+)	1392	WP_399091012.1	trigger factor	-
ACGH2B_RS19240 (ACGH2B_19240)	clpP	4740623..4741225 (+)	603	WP_399097122.1	ATP-dependent Clp protease proteolytic subunit	Regulator
ACGH2B_RS19245 (ACGH2B_19245)	clpP	4741293..4741970 (+)	678	WP_399091015.1	ATP-dependent Clp protease proteolytic subunit	Regulator
ACGH2B_RS19250 (ACGH2B_19250)	clpX	4742129..4743412 (+)	1284	WP_399091018.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
ACGH2B_RS19255 (ACGH2B_19255)	-	4743488..4744435 (-)	948	WP_399091021.1	hypothetical protein	-

Sequence

Protein

Download Length: 200 a.a. Molecular weight: 21130.92 Da Isoelectric Point: 4.6729

                                >NTDB_id=953600 ACGH2B_RS19240 WP_399097122.1 4740623..4741225(+) (clpP) [Streptomyces sp. BBFR2]

MPSAAAEPTFGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSISAGLAIYDTMQYI

KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAFHTGQTVEQ

ITRDSDRDHWFSADEAKEYGLIDDVMTSASGVPGGGGTGA

Nucleotide

Download Length: 603 bp

                                >NTDB_id=953600 ACGH2B_RS19240 WP_399097122.1 4740623..4741225(+) (clpP) [Streptomyces sp. BBFR2]

ATGCCTTCCGCCGCCGCTGAGCCGACCTTCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT

CTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTTCTTCTCCTGGCCGCGGACCCGGACA

AGGACATCTTCCTCTACATCAACTCCCCGGGCGGCTCGATCTCGGCCGGCCTGGCGATCTACGACACCATGCAGTACATC

AAGAACGACGTGGTGACGATCGCCATGGGCCTGGCCGCCTCCATGGGGCAGTTCCTGCTGAGCGCCGGTACCCCGGGCAA

GCGGTTCGCGCTGCCCAACGCGGAGATCCTCATCCACCAGCCCTCCGCCGGTCTCGCCGGCTCCGCGTCGGACATCAAGA

TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTGACCGCCTTCCACACCGGTCAGACCGTCGAGCAG

ATCACCCGTGACTCCGACCGCGACCACTGGTTCTCCGCCGACGAGGCGAAGGAGTACGGCCTCATCGACGACGTCATGAC

CTCCGCCTCCGGCGTTCCGGGCGGGGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-188)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	54.787	94	0.515
clpP	Lactococcus lactis subsp. cremoris KW2	52.332	96.5	0.505
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.813	96.5	0.5
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	52.105	95	0.495
clpP	Streptococcus mutans UA159	51.309	95.5	0.49
clpP	Streptococcus pyogenes MGAS315	50.262	95.5	0.48
clpP	Streptococcus pyogenes JRS4	50.262	95.5	0.48
clpP	Streptococcus thermophilus LMG 18311	50.262	95.5	0.48
clpP	Streptococcus thermophilus LMD-9	50.262	95.5	0.48
clpP	Streptococcus pneumoniae Rx1	49.223	96.5	0.475
clpP	Streptococcus pneumoniae D39	49.223	96.5	0.475
clpP	Streptococcus pneumoniae R6	49.223	96.5	0.475
clpP	Streptococcus pneumoniae TIGR4	49.223	96.5	0.475

Detailed information NTG0953600