Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WHF41_RS16965 Genome accession   NZ_CP148032
Coordinates   3406022..3406426 (-) Length   134 a.a.
NCBI ID   WP_019224913.1    Uniprot ID   A0A1C2XQY2
Organism   MAG: Dehalobacter restrictus isolate SAD     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3401022..3411426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHF41_RS16940 (WHF41_16850) lonC 3401928..3403844 (-) 1917 WP_019224916.1 Lon family ATP-dependent protease -
  WHF41_RS16945 (WHF41_16855) rplI 3403878..3404324 (-) 447 WP_019224915.1 50S ribosomal protein L9 -
  WHF41_RS16950 (WHF41_16860) - 3404321..3405268 (-) 948 WP_019224914.1 DUF2232 domain-containing protein -
  WHF41_RS16955 (WHF41_16865) - 3405284..3405607 (-) 324 WP_015044995.1 MazG-like family protein -
  WHF41_RS16960 (WHF41_16870) rpsR 3405756..3406001 (-) 246 WP_015044996.1 30S ribosomal protein S18 -
  WHF41_RS16965 (WHF41_16875) ssbA 3406022..3406426 (-) 405 WP_019224913.1 single-stranded DNA-binding protein Machinery gene
  WHF41_RS16970 (WHF41_16880) rpsF 3406445..3406729 (-) 285 WP_015044998.1 30S ribosomal protein S6 -
  WHF41_RS16975 (WHF41_16885) ychF 3406866..3407966 (-) 1101 WP_019224912.1 redox-regulated ATPase YchF -
  WHF41_RS16980 (WHF41_16890) - 3407994..3408197 (-) 204 WP_015045000.1 DUF951 domain-containing protein -
  WHF41_RS16985 (WHF41_16895) - 3408216..3408881 (-) 666 WP_019224911.1 CvpA family protein -
  WHF41_RS16995 (WHF41_16905) - 3409574..3409789 (+) 216 WP_015045002.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14868.67 Da        Isoelectric Point: 5.2044

>NTDB_id=950125 WHF41_RS16965 WP_019224913.1 3406022..3406426(-) (ssbA) [MAG: Dehalobacter restrictus isolate SAD]
MLNRVVLIGRLTKDPELRYTPNGVAVASFTLAVDRNYKNSQGEKETDFIPCVVFRQLAELCANYLAKGRLAAVDGRIQVR
SYDGQDGQKRWVTEVLGENVRFLSPKDNNAGASSAQNDFGSFAHEVSLDDDIPF

Nucleotide


Download         Length: 405 bp        

>NTDB_id=950125 WHF41_RS16965 WP_019224913.1 3406022..3406426(-) (ssbA) [MAG: Dehalobacter restrictus isolate SAD]
ATGTTGAATCGTGTAGTACTTATCGGGCGATTAACGAAAGACCCTGAGCTACGCTATACACCAAACGGTGTAGCTGTTGC
ATCTTTTACGCTAGCCGTCGACAGGAATTACAAGAACAGCCAGGGCGAGAAGGAAACGGATTTTATTCCATGCGTTGTTT
TTCGCCAGTTAGCTGAACTCTGCGCGAACTATTTGGCGAAAGGAAGACTGGCTGCAGTAGATGGCAGGATTCAGGTCCGC
TCTTATGACGGTCAGGATGGGCAAAAAAGATGGGTGACAGAGGTCTTGGGAGAGAACGTCAGATTTTTGAGTCCCAAAGA
CAATAATGCCGGAGCATCTTCAGCTCAAAATGATTTTGGTTCTTTTGCTCATGAAGTTAGTCTAGATGATGATATACCAT
TTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2XQY2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.421

79.851

0.522
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.679

83.582

0.44
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

100

0.418
  ssbB/cilA Streptococcus mitis SK321

39.286

100

0.41
  ssbB/cilA Streptococcus pneumoniae R6

39.286

100

0.41
  ssbB/cilA Streptococcus mitis NCTC 12261

39.286

100

0.41
  ssbB/cilA Streptococcus pneumoniae Rx1

39.286

100

0.41
  ssbB/cilA Streptococcus pneumoniae D39

39.286

100

0.41
  ssb Latilactobacillus sakei subsp. sakei 23K

50.943

79.104

0.403
  ssbA Streptococcus mutans UA159

38.519

100

0.388