Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACHGLA_RS12350 Genome accession   NZ_CP171841
Coordinates   2817534..2818151 (-) Length   205 a.a.
NCBI ID   WP_383592536.1    Uniprot ID   -
Organism   Streptomyces sp. YH02     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2812534..2823151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGLA_RS12335 (ACHGLA_12335) - 2814346..2815302 (+) 957 WP_395360601.1 hypothetical protein -
  ACHGLA_RS12340 (ACHGLA_12340) clpX 2815370..2816653 (-) 1284 WP_024755522.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACHGLA_RS12345 (ACHGLA_12345) clpP 2816810..2817472 (-) 663 WP_318211198.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACHGLA_RS12350 (ACHGLA_12350) clpP 2817534..2818151 (-) 618 WP_383592536.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACHGLA_RS12355 (ACHGLA_12355) tig 2818392..2819777 (-) 1386 WP_395360602.1 trigger factor -
  ACHGLA_RS12370 (ACHGLA_12370) - 2820365..2820739 (+) 375 WP_395360603.1 amphi-Trp domain-containing protein -
  ACHGLA_RS12375 (ACHGLA_12375) - 2820744..2820938 (-) 195 WP_015033610.1 hypothetical protein -
  ACHGLA_RS12380 (ACHGLA_12380) - 2821063..2822208 (-) 1146 WP_395360604.1 PP2C family protein-serine/threonine phosphatase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21701.66 Da        Isoelectric Point: 4.6831

>NTDB_id=949283 ACHGLA_RS12350 WP_383592536.1 2817534..2818151(-) (clpP) [Streptomyces sp. YH02]
MTNLKPYAAGEPSIGGGLGDHVYNRLLGERIIFLGQQVDDEIANKITAQMLLLAAEPDKDIYLYINSPGGSVTAGMAVYD
TMQFIPNDVVTIGMGMAASMGQFLLTAGAPGKRFALPNTDILMHQGSAGIGGTASDIKIQAEYLLRTKKRMAEITAQHSG
QTVETIIRDGDRDRWFTADEAKEYGLIDDIITHAAGVPGGGGTGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=949283 ACHGLA_RS12350 WP_383592536.1 2817534..2818151(-) (clpP) [Streptomyces sp. YH02]
GTGACGAATCTGAAGCCTTACGCCGCGGGTGAGCCGTCCATCGGTGGCGGCCTCGGCGACCATGTCTACAACCGGCTGCT
CGGCGAGCGGATCATCTTCCTCGGCCAGCAGGTCGACGACGAGATCGCCAACAAGATCACCGCCCAGATGCTCCTCCTGG
CCGCCGAGCCGGACAAGGACATCTACCTGTACATCAACAGCCCCGGCGGCTCGGTGACGGCCGGCATGGCGGTCTACGAC
ACCATGCAGTTCATCCCGAACGACGTCGTCACCATCGGTATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTCACCGC
CGGCGCCCCCGGCAAGCGCTTCGCGCTGCCGAACACCGACATCCTGATGCACCAGGGCTCCGCCGGCATCGGCGGCACGG
CCTCCGACATCAAGATCCAGGCCGAGTACCTCCTGCGCACGAAGAAGCGCATGGCCGAGATCACCGCGCAGCACTCCGGC
CAGACCGTCGAGACAATCATCCGCGACGGTGACCGTGACCGCTGGTTCACCGCGGACGAGGCCAAGGAGTACGGCCTCAT
CGACGACATCATCACGCACGCCGCAGGTGTTCCGGGCGGCGGCGGCACGGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.125

93.659

0.498
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.579

92.683

0.478
  clpP Lactococcus lactis subsp. cremoris KW2

50.538

90.732

0.459
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50

90.732

0.454
  clpP Streptococcus mutans UA159

52

85.366

0.444
  clpP Streptococcus pneumoniae TIGR4

50.286

85.366

0.429
  clpP Streptococcus pneumoniae Rx1

50.286

85.366

0.429
  clpP Streptococcus thermophilus LMG 18311

50.286

85.366

0.429
  clpP Streptococcus thermophilus LMD-9

50.286

85.366

0.429
  clpP Streptococcus pneumoniae D39

50.286

85.366

0.429
  clpP Streptococcus pneumoniae R6

50.286

85.366

0.429
  clpP Streptococcus pyogenes JRS4

50.289

84.39

0.424
  clpP Streptococcus pyogenes MGAS315

50.289

84.39

0.424