Detailed information NTG0949281

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: ACHGLA_RS12340
• Genome accession: NZ_CP171841
• Coordinates: 2815370..2816653 (-)
• Length: 427 a.a.
• NCBI ID: WP_024755522.1
• Uniprot ID: A0ABW6XJ92
• Organism: Streptomyces sp. YH02
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2810370..2821653

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHGLA_RS12330 (ACHGLA_12330)	-	2811559..2814207 (-)	2649	WP_395360600.1	valine--tRNA ligase	-
ACHGLA_RS12335 (ACHGLA_12335)	-	2814346..2815302 (+)	957	WP_395360601.1	hypothetical protein	-
ACHGLA_RS12340 (ACHGLA_12340)	clpX	2815370..2816653 (-)	1284	WP_024755522.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
ACHGLA_RS12345 (ACHGLA_12345)	clpP	2816810..2817472 (-)	663	WP_318211198.1	ATP-dependent Clp protease proteolytic subunit	Regulator
ACHGLA_RS12350 (ACHGLA_12350)	clpP	2817534..2818151 (-)	618	WP_383592536.1	ATP-dependent Clp protease proteolytic subunit	Regulator
ACHGLA_RS12355 (ACHGLA_12355)	tig	2818392..2819777 (-)	1386	WP_395360602.1	trigger factor	-
ACHGLA_RS12370 (ACHGLA_12370)	-	2820365..2820739 (+)	375	WP_395360603.1	amphi-Trp domain-containing protein	-
ACHGLA_RS12375 (ACHGLA_12375)	-	2820744..2820938 (-)	195	WP_015033610.1	hypothetical protein	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 46672.50 Da
• Isoelectric Point: 4.8738

>NTDB_id=949281 ACHGLA_RS12340 WP_024755522.1 2815370..2816653(-) (clpX) [Streptomyces sp. YH02]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGAGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFDRPALEAIADQAILRGTGARGLRAIMEEVLQSVMYEVPSRKDVARVVIT
ADVVRNNVNPTLVPRIVKNDGRHEKSA

Nucleotide

• Length: 1284 bp

>NTDB_id=949281 ACHGLA_RS12340 WP_024755522.1 2815370..2816653(-) (clpX) [Streptomyces sp. YH02]
GTGGCACGCATCGGTGATGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCGGGACCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACGA
GCGAGGTGCGCTGGGAGGAACTCCCCAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGGTACGTCGTCGGGCAGGAGCCC
GCGAAGAAGGCCCTCTCGGTCGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGCGAGAACGGCGGCGGGGCGGGCCG
TGACGACGCCATCGAACTGGCGAAGTCCAACATTCTGCTGCTGGGCCCCACGGGCTCCGGCAAGACGCTCCTGGCCCAGA
CGCTGGCGCGGATGCTCAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGCTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGAATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGTAAGAGCGAAAACCCGTCGATCACCCGCGATGTCTCCGGCGAGGGCGTGCAGCAGGCCC
TCCTGAAGATCCTGGAAGGGACGACGGCCTCGGTTCCCCCGCAGGGCGGCCGGAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGCGCCTTCGCCGGCCTGGAGAAGATCATCGAGTCGCGGGCGGGCGC
CAAGGGCATCGGCTTCGGGGCGACCATCCGCTCGAAGCGCGAGATCGAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCCGTCCTCACCTCCGTCCACAACCTGGACCGC
GAGGCGCTCCTCCAGATCCTGGTCGAGCCGCGGAACGCGCTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGACCGCCCGGCCCTGGAGGCCATCGCCGACCAGGCGATCCTCCGCGGCACCGGCGCGCGCGGCCTGC
GGGCCATCATGGAGGAGGTCCTCCAGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACG
GCGGACGTCGTCCGCAACAACGTCAACCCGACGCTGGTCCCGCGCATCGTGAAGAACGACGGCAGGCACGAGAAGTCGGC
CTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.682	94.145	0.6
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.528	96.253	0.515