Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACHGLA_RS12345 Genome accession   NZ_CP171841
Coordinates   2816810..2817472 (-) Length   220 a.a.
NCBI ID   WP_318211198.1    Uniprot ID   -
Organism   Streptomyces sp. YH02     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2811810..2822472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGLA_RS12335 (ACHGLA_12335) - 2814346..2815302 (+) 957 WP_395360601.1 hypothetical protein -
  ACHGLA_RS12340 (ACHGLA_12340) clpX 2815370..2816653 (-) 1284 WP_024755522.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACHGLA_RS12345 (ACHGLA_12345) clpP 2816810..2817472 (-) 663 WP_318211198.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACHGLA_RS12350 (ACHGLA_12350) clpP 2817534..2818151 (-) 618 WP_383592536.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACHGLA_RS12355 (ACHGLA_12355) tig 2818392..2819777 (-) 1386 WP_395360602.1 trigger factor -
  ACHGLA_RS12370 (ACHGLA_12370) - 2820365..2820739 (+) 375 WP_395360603.1 amphi-Trp domain-containing protein -
  ACHGLA_RS12375 (ACHGLA_12375) - 2820744..2820938 (-) 195 WP_015033610.1 hypothetical protein -
  ACHGLA_RS12380 (ACHGLA_12380) - 2821063..2822208 (-) 1146 WP_395360604.1 PP2C family protein-serine/threonine phosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24050.39 Da        Isoelectric Point: 4.7937

>NTDB_id=949282 ACHGLA_RS12345 WP_318211198.1 2816810..2817472(-) (clpP) [Streptomyces sp. YH02]
MQNNLSASGLYTGAPMDNRYVVPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI
YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDLEIAAR
EILRMRSQLEEMLAKHSSTPIEKIRDDIERDKILTAEDALAYGLVDQIVSTRKSTAAAAH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=949282 ACHGLA_RS12345 WP_318211198.1 2816810..2817472(-) (clpP) [Streptomyces sp. YH02]
ATGCAGAACAACCTCTCCGCGAGCGGCCTCTACACCGGCGCGCCGATGGACAACCGCTACGTCGTGCCGCGCTTCGTCGA
GCGCACCTCGCAGGGCATCCGCGAGTACGACCCGTACGCCAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGCGTGCAGA
TCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGCGACATCTCCATC
TACATCAACAGCCCCGGTGGCTCCTTCACCGCGCTGACGGCGATCTACGACACGATGCAGTTCGTGAAGCCGGACATCCA
GACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCCGGCACCCCCGGCAAGCGGATGGCCCTGC
CGAACGCCCGCGTGCTGATCCACCAGCCGTCCGGCGGCACCGGCCGTGAGCAGCTCTCCGACCTGGAGATCGCCGCCCGC
GAGATCCTGCGCATGCGCAGCCAGCTCGAGGAGATGCTGGCCAAGCACTCCTCGACGCCGATCGAGAAGATCCGCGACGA
CATCGAGCGTGACAAGATCCTCACGGCCGAGGACGCCCTGGCGTACGGCCTGGTGGACCAGATCGTCTCGACCCGTAAGA
GCACGGCCGCCGCGGCACACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(31-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

86.364

0.445
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.936

85.455

0.418
  clpP Streptococcus thermophilus LMD-9

45.361

88.182

0.4
  clpP Streptococcus pyogenes JRS4

45.361

88.182

0.4
  clpP Streptococcus pyogenes MGAS315

45.361

88.182

0.4
  clpP Streptococcus thermophilus LMG 18311

45.361

88.182

0.4
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

86.818

0.395
  clpP Streptococcus mutans UA159

44.845

88.182

0.395
  clpP Streptococcus pneumoniae D39

44.56

87.727

0.391
  clpP Streptococcus pneumoniae TIGR4

44.56

87.727

0.391
  clpP Streptococcus pneumoniae R6

44.56

87.727

0.391
  clpP Streptococcus pneumoniae Rx1

44.56

87.727

0.391
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

86.818

0.386