Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   WAX87_RS13460 Genome accession   NZ_CP146967
Coordinates   2909429..2909827 (+) Length   132 a.a.
NCBI ID   WP_106142458.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain WMD-P1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2904429..2914827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAX87_RS13445 (WAX87_13445) aceE 2904593..2907253 (-) 2661 WP_106141849.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type -
  WAX87_RS13450 (WAX87_13450) pdhR 2907334..2908107 (-) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  WAX87_RS13455 (WAX87_13455) ampD 2908466..2909044 (-) 579 WP_106141850.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  WAX87_RS13460 (WAX87_13460) pilA 2909429..2909827 (+) 399 WP_106142458.1 pilin Machinery gene
  WAX87_RS13465 (WAX87_13465) pilB 2909835..2911526 (+) 1692 WP_341496133.1 type IV-A pilus assembly ATPase PilB Machinery gene
  WAX87_RS13470 (WAX87_13470) pilC 2911592..2912818 (+) 1227 WP_068969232.1 type II secretion system F family protein Machinery gene
  WAX87_RS13475 (WAX87_13475) pilD 2913001..2913879 (+) 879 WP_106142459.1 A24 family peptidase Machinery gene
  WAX87_RS13480 (WAX87_13480) coaE 2913881..2914483 (+) 603 WP_341495847.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 13862.77 Da        Isoelectric Point: 4.1079

>NTDB_id=945183 WAX87_RS13460 WP_106142458.1 2909429..2909827(+) (pilA) [Photobacterium damselae subsp. damselae strain WMD-P1]
MKGQKGFTLIELMIVVAIIGVLSAVAIPAYKDYVTKSEASSGLATMKALITPAELYIQESGDLATTTTLDKIGTTGTENT
LGTITISAENTLLFTFNNTSSLNSETITLARDDTTGWACTLSTNMPNVDGCS

Nucleotide


Download         Length: 399 bp        

>NTDB_id=945183 WAX87_RS13460 WP_106142458.1 2909429..2909827(+) (pilA) [Photobacterium damselae subsp. damselae strain WMD-P1]
ATGAAAGGACAAAAGGGTTTTACCTTAATTGAATTGATGATCGTAGTGGCGATCATTGGTGTGTTGTCAGCTGTAGCAAT
TCCTGCTTATAAGGATTATGTCACAAAATCTGAAGCTTCTTCTGGATTAGCCACAATGAAAGCTCTAATTACGCCAGCAG
AGCTATATATTCAAGAAAGTGGAGATCTCGCGACAACAACTACCTTAGATAAAATTGGAACAACTGGAACTGAAAATACA
TTAGGAACAATAACTATCTCTGCTGAGAATACATTATTATTCACATTCAATAATACGAGCTCATTAAATTCCGAAACAAT
AACTCTAGCACGAGATGATACAACAGGTTGGGCATGCACATTATCAACCAATATGCCTAACGTAGATGGCTGTAGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-125)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Vibrio parahaemolyticus RIMD 2210633

54.815

100

0.561
  pilA Pseudomonas aeruginosa PAK

39.597

100

0.447
  pilA Vibrio cholerae strain A1552

44.186

97.727

0.432
  pilA Vibrio cholerae C6706

44.186

97.727

0.432
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

44.186

97.727

0.432
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.692

98.485

0.371
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.71

93.939

0.364
  pilA2 Legionella pneumophila str. Paris

39.024

93.182

0.364