Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WAX87_RS13470 Genome accession   NZ_CP146967
Coordinates   2911592..2912818 (+) Length   408 a.a.
NCBI ID   WP_068969232.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain WMD-P1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2906592..2917818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAX87_RS13450 (WAX87_13450) pdhR 2907334..2908107 (-) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  WAX87_RS13455 (WAX87_13455) ampD 2908466..2909044 (-) 579 WP_106141850.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  WAX87_RS13460 (WAX87_13460) pilA 2909429..2909827 (+) 399 WP_106142458.1 pilin Machinery gene
  WAX87_RS13465 (WAX87_13465) pilB 2909835..2911526 (+) 1692 WP_341496133.1 type IV-A pilus assembly ATPase PilB Machinery gene
  WAX87_RS13470 (WAX87_13470) pilC 2911592..2912818 (+) 1227 WP_068969232.1 type II secretion system F family protein Machinery gene
  WAX87_RS13475 (WAX87_13475) pilD 2913001..2913879 (+) 879 WP_106142459.1 A24 family peptidase Machinery gene
  WAX87_RS13480 (WAX87_13480) coaE 2913881..2914483 (+) 603 WP_341495847.1 dephospho-CoA kinase -
  WAX87_RS13485 (WAX87_13485) zapD 2914551..2915288 (+) 738 WP_005297594.1 cell division protein ZapD -
  WAX87_RS13490 (WAX87_13490) yacG 2915297..2915506 (+) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  WAX87_RS13495 (WAX87_13495) mutT 2915753..2916193 (+) 441 WP_086957272.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45030.18 Da        Isoelectric Point: 10.0330

>NTDB_id=945185 WAX87_RS13470 WP_068969232.1 2911592..2912818(+) (pilC) [Photobacterium damselae subsp. damselae strain WMD-P1]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAIGLLLALVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=945185 WAX87_RS13470 WP_068969232.1 2911592..2912818(+) (pilC) [Photobacterium damselae subsp. damselae strain WMD-P1]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGGGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCCTAGGTTTTCAAGAACAAGAAGTGCGAGCGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ATCCTTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGTAGCGATGTAACGGCTATTACTCGCCAACTTGCGACCATG
ATCGAATCTGGAGTTCCGATTGTACAAGCTCTGAAGCTAATGGCCAGTAGTCATCATAAAGCAGAAGTGCGCGCGGTATT
AACTCAGGTTAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCGCTAAAATCAAGTTCGCCGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTTGGTCAAGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGCGAAGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTCGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCAGAACTTCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTCCTAATTAACTATGGGGGATACTTAGCTATAGGTTTGCTGCTTGCACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATGGCTAGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTCGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACTTTTAGTGCCGGTATTCCACTACTAACAG
GTCTACAGTCGGCTGGTAAAACCGCAGGTAACTTACATATAGAAGAGGCCATTATGGAAGCACATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTGCAGATGACCATGATCGGAGAAGA
GTCTGGCTCTCTTGATGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTGATCGGTGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

55.75

98.039

0.547
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilG Neisseria meningitidis 44/76-A

42.469

99.265

0.422
  pilG Neisseria gonorrhoeae MS11

42.469

99.265

0.422
  pilC Acinetobacter baumannii D1279779

40.441

100

0.404
  pilC Pseudomonas stutzeri DSM 10701

40.295

99.755

0.402
  pilC Acinetobacter baylyi ADP1

39.798

97.304

0.387
  pilC Legionella pneumophila strain ERS1305867

38.191

97.549

0.373