Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | V7A35_RS01335 | Genome accession | NZ_CP146754 |
| Coordinates | 271073..271462 (+) | Length | 129 a.a. |
| NCBI ID | WP_019291355.1 | Uniprot ID | A0A252CCZ8 |
| Organism | Lactococcus petauri strain L1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 271073..274965 | 271073..271462 | within | 0 |
Gene organization within MGE regions
Location: 271073..274965
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V7A35_RS01335 (V7A35_01335) | ssbB | 271073..271462 (+) | 390 | WP_019291355.1 | single-stranded DNA-binding protein | Machinery gene |
| V7A35_RS01340 (V7A35_01340) | - | 271519..272049 (+) | 531 | WP_019291354.1 | ClbS/DfsB family four-helix bundle protein | - |
| V7A35_RS01345 (V7A35_01345) | groES | 272167..272448 (+) | 282 | WP_019291353.1 | co-chaperone GroES | - |
| V7A35_RS01350 (V7A35_01350) | groL | 272478..274103 (+) | 1626 | WP_003133890.1 | chaperonin GroEL | - |
| V7A35_RS01355 (V7A35_01355) | - | 274153..274965 (-) | 813 | WP_019291352.1 | MBL fold metallo-hydrolase | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14707.85 Da Isoelectric Point: 9.3830
>NTDB_id=944177 V7A35_RS01335 WP_019291355.1 271073..271462(+) (ssbB) [Lactococcus petauri strain L1]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFVALVFWEKQAEHCTSYAKKGALLAVEGEIRTRN
YVDKQEQKRYVTEVLVKTFDLLESRATVAMRQDSIENSALNLKEDELPF
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFVALVFWEKQAEHCTSYAKKGALLAVEGEIRTRN
YVDKQEQKRYVTEVLVKTFDLLESRATVAMRQDSIENSALNLKEDELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=944177 V7A35_RS01335 WP_019291355.1 271073..271462(+) (ssbB) [Lactococcus petauri strain L1]
ATGAATAAAACGTTACTTGTTGGCCGACTCGTTGCAGATCCAGAACTCACTAAAACATCTAATGGGAAAAGCCTATTGAG
GATAAATCTCGCTGTCAAACGACGCTATAAAAATGCTTCAGGTGAAAAAGATACAGACTTTGTCGCTTTGGTCTTTTGGG
AGAAACAGGCGGAACACTGTACATCCTATGCTAAAAAAGGCGCCCTACTTGCTGTGGAAGGGGAGATACGAACCAGGAAT
TATGTGGACAAGCAGGAACAAAAGCGCTATGTAACAGAAGTGTTGGTAAAAACTTTTGACCTTTTGGAAAGTCGCGCGAC
AGTTGCCATGCGACAAGATTCTATAGAAAATAGTGCTCTTAATTTAAAAGAAGATGAATTACCGTTTTAA
ATGAATAAAACGTTACTTGTTGGCCGACTCGTTGCAGATCCAGAACTCACTAAAACATCTAATGGGAAAAGCCTATTGAG
GATAAATCTCGCTGTCAAACGACGCTATAAAAATGCTTCAGGTGAAAAAGATACAGACTTTGTCGCTTTGGTCTTTTGGG
AGAAACAGGCGGAACACTGTACATCCTATGCTAAAAAAGGCGCCCTACTTGCTGTGGAAGGGGAGATACGAACCAGGAAT
TATGTGGACAAGCAGGAACAAAAGCGCTATGTAACAGAAGTGTTGGTAAAAACTTTTGACCTTTTGGAAAGTCGCGCGAC
AGTTGCCATGCGACAAGATTCTATAGAAAATAGTGCTCTTAATTTAAAAGAAGATGAATTACCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
57.364 |
100 |
0.574 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
52.308 |
100 |
0.527 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
52.308 |
100 |
0.527 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
51.538 |
100 |
0.519 |
| ssbA | Streptococcus mutans UA159 |
51.538 |
100 |
0.519 |
| ssbB/cilA | Streptococcus mitis SK321 |
51.538 |
100 |
0.519 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
51.538 |
100 |
0.519 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
51.538 |
100 |
0.519 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
51.538 |
100 |
0.519 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
45.536 |
86.822 |
0.395 |