Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | V4331_RS01345 | Genome accession | NZ_CP146743 |
| Coordinates | 270305..270694 (+) | Length | 129 a.a. |
| NCBI ID | WP_096368717.1 | Uniprot ID | - |
| Organism | Lactococcus formosensis subsp. formosensis strain L5 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 270305..274197 | 270305..270694 | within | 0 |
Gene organization within MGE regions
Location: 270305..274197
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V4331_RS01345 (V4331_01345) | ssbB | 270305..270694 (+) | 390 | WP_096368717.1 | single-stranded DNA-binding protein | Machinery gene |
| V4331_RS01350 (V4331_01350) | - | 270752..271282 (+) | 531 | WP_096368716.1 | ClbS/DfsB family four-helix bundle protein | - |
| V4331_RS01355 (V4331_01355) | groES | 271398..271679 (+) | 282 | WP_096368715.1 | co-chaperone GroES | - |
| V4331_RS01360 (V4331_01360) | groL | 271708..273333 (+) | 1626 | WP_003133890.1 | chaperonin GroEL | - |
| V4331_RS01365 (V4331_01365) | - | 273385..274197 (-) | 813 | WP_017369447.1 | MBL fold metallo-hydrolase | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14833.08 Da Isoelectric Point: 9.3695
>NTDB_id=944000 V4331_RS01345 WP_096368717.1 270305..270694(+) (ssbB) [Lactococcus formosensis subsp. formosensis strain L5]
MNKMLLVGRLVADPELNKTSSGKSLLRINLAVKRRYKNASGEKDTDFISLVFWEKLAEHCTSYAKKGALLAVEGEIRTRS
YVDKHEQKRYVTEILVKNFDLLESRATIAMRQDSIKNNDIDLKEDELPF
MNKMLLVGRLVADPELNKTSSGKSLLRINLAVKRRYKNASGEKDTDFISLVFWEKLAEHCTSYAKKGALLAVEGEIRTRS
YVDKHEQKRYVTEILVKNFDLLESRATIAMRQDSIKNNDIDLKEDELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=944000 V4331_RS01345 WP_096368717.1 270305..270694(+) (ssbB) [Lactococcus formosensis subsp. formosensis strain L5]
ATGAATAAAATGTTACTTGTTGGTCGACTCGTTGCGGACCCAGAGCTCAATAAAACATCCAGTGGAAAAAGTCTCTTGAG
GATAAATCTTGCTGTCAAAAGACGTTATAAAAATGCTTCCGGGGAAAAAGATACAGACTTTATCTCTTTGGTCTTTTGGG
AGAAACTAGCGGAACACTGTACATCCTATGCTAAAAAAGGAGCCTTACTTGCCGTGGAAGGGGAGATACGTACCAGAAGT
TATGTAGATAAACATGAACAAAAACGTTATGTGACAGAGATACTGGTGAAAAATTTTGATCTTTTAGAGAGTCGTGCAAC
CATCGCCATGCGACAAGATTCTATAAAAAACAATGACATTGACTTAAAAGAGGACGAATTACCATTTTAA
ATGAATAAAATGTTACTTGTTGGTCGACTCGTTGCGGACCCAGAGCTCAATAAAACATCCAGTGGAAAAAGTCTCTTGAG
GATAAATCTTGCTGTCAAAAGACGTTATAAAAATGCTTCCGGGGAAAAAGATACAGACTTTATCTCTTTGGTCTTTTGGG
AGAAACTAGCGGAACACTGTACATCCTATGCTAAAAAAGGAGCCTTACTTGCCGTGGAAGGGGAGATACGTACCAGAAGT
TATGTAGATAAACATGAACAAAAACGTTATGTGACAGAGATACTGGTGAAAAATTTTGATCTTTTAGAGAGTCGTGCAAC
CATCGCCATGCGACAAGATTCTATAAAAAACAATGACATTGACTTAAAAGAGGACGAATTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
57.364 |
100 |
0.574 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
53.077 |
100 |
0.535 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
50.769 |
100 |
0.512 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
50.769 |
100 |
0.512 |
| ssbA | Streptococcus mutans UA159 |
50 |
100 |
0.504 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
50 |
100 |
0.504 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
50 |
100 |
0.504 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
50 |
100 |
0.504 |
| ssbB/cilA | Streptococcus mitis SK321 |
50 |
100 |
0.504 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
45.536 |
86.822 |
0.395 |