Detailed information NTG0943403

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: V6Z91_RS13105
• Genome accession: NZ_CP146614
• Coordinates: 2951142..2952371 (-)
• Length: 409 a.a.
• NCBI ID: WP_338770925.1
• Uniprot ID: -
• Organism: Massilia sp. METH4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2946142..2957371

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6Z91_RS13090	-	2946941..2948764 (+)	1824	WP_338770921.1	alpha-amylase family glycosyl hydrolase	-
V6Z91_RS13095	-	2948795..2949751 (+)	957	WP_338770922.1	PfkB family carbohydrate kinase	-
V6Z91_RS13100	-	2949794..2951134 (+)	1341	WP_338770923.1	MFS transporter	-
V6Z91_RS13105	pilC	2951142..2952371 (-)	1230	WP_338770925.1	type II secretion system F family protein	Machinery gene
V6Z91_RS13110	pilF	2952395..2954080 (-)	1686	WP_338770927.1	type IV-A pilus assembly ATPase PilB	Machinery gene
V6Z91_RS13115	-	2954362..2955216 (+)	855	WP_338770928.1	helix-turn-helix domain-containing protein	-
V6Z91_RS13120	-	2955297..2955791 (+)	495	WP_338770930.1	NADH-quinone oxidoreductase subunit B family protein	-
V6Z91_RS13125	-	2955903..2957117 (+)	1215	WP_338770932.1	glutamate carboxypeptidase	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 44659.64 Da
• Isoelectric Point: 9.8301

>NTDB_id=943403 V6Z91_RS13105 WP_338770925.1 2951142..2952371(-) (pilC) [Massilia sp. METH4]
MAYAPNRTRDNQVKESIFAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGIMVTKVKKKVYRSGKKVTDKDITLFTRQLA
TMMKAGVPLLQSFDIVGKGHANPSVSKLVMDLRADIETGTSLNGAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLALY
KEKTLAMKAKIKSALTYPIAILAVAFIVTAVIMIWVVPAFKEVFTSFGADLPAPTLFVMAMSEFFVNWWYVIFGGLFAGI
YFFFQAWRRSPPMQQAMDRLLLKVPVFGDVVRKATIARWTRTLATMFAAGVPLVEALDSVGGASGNAVYIDATRTIQKDV
STGVSLTVAMQNVEVFPNMVTQMVAIGEESGALDGMLGKVADFYEQEVDEAVASLSSLMEPAIMVILGVLIGGLVVAMYL
PIFKLGSVV

Nucleotide

• Length: 1230 bp

>NTDB_id=943403 V6Z91_RS13105 WP_338770925.1 2951142..2952371(-) (pilC) [Massilia sp. METH4]
ATGGCATACGCGCCGAACAGGACCAGGGATAACCAGGTCAAGGAATCGATCTTCGCCTGGGAAGGCAAGGACAAGACGGG
CAAGACCGTGCGCGGCGAATTGCGCGCCGGCGGCGAAGCCGTGGTGAACGTGACCCTGCGCCGCCAGGGCATCATGGTCA
CCAAGGTGAAGAAGAAGGTGTACCGCTCCGGCAAGAAGGTCACGGACAAGGACATCACCCTCTTCACCCGCCAGCTGGCG
ACGATGATGAAGGCCGGCGTGCCCCTGCTGCAATCGTTCGATATCGTGGGCAAGGGCCACGCCAACCCGTCGGTCTCGAA
GCTGGTGATGGACCTGCGCGCCGACATCGAAACGGGCACCAGCCTGAATGGCGCGTTCCGCAAGTTCCCGCTGTACTTCG
ACCCGCTGTTCTGCAACCTGGTGGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTCACGCGCCTGGCCCTGTAC
AAGGAAAAGACGCTGGCCATGAAGGCCAAGATCAAGTCCGCCCTCACCTACCCGATCGCCATCCTGGCGGTGGCCTTCAT
CGTCACGGCCGTGATCATGATCTGGGTGGTACCCGCGTTCAAGGAAGTGTTCACCAGCTTCGGTGCCGACCTGCCGGCGC
CCACGCTGTTCGTGATGGCGATGTCGGAATTCTTCGTGAACTGGTGGTACGTGATCTTCGGCGGCCTGTTCGCCGGCATC
TATTTCTTCTTCCAGGCGTGGCGGCGCTCGCCGCCGATGCAGCAGGCCATGGACCGGCTGCTGTTGAAGGTGCCCGTGTT
CGGCGATGTGGTCCGCAAGGCAACGATCGCGCGCTGGACCCGCACGCTGGCGACGATGTTCGCGGCCGGCGTGCCGCTCG
TCGAAGCGCTCGACTCGGTCGGCGGTGCCTCCGGCAACGCCGTCTATATCGATGCCACGCGCACGATCCAGAAGGACGTG
TCCACCGGCGTGAGCCTGACGGTGGCGATGCAGAACGTGGAAGTGTTCCCCAATATGGTCACGCAGATGGTCGCCATCGG
CGAGGAATCCGGCGCGCTGGACGGCATGCTGGGCAAGGTGGCCGACTTCTACGAGCAGGAAGTGGACGAGGCGGTCGCTT
CGCTGTCGTCGCTGATGGAGCCGGCGATCATGGTGATCCTCGGCGTGCTGATCGGCGGGCTGGTGGTGGCCATGTATTTG
CCGATCTTCAAGCTGGGCTCCGTCGTCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (75-198)

• Type II secretion system (T2SS), protein F (T2SSF) (279-401)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	56.75	97.8	0.555
pilC	Legionella pneumophila strain ERS1305867	54.798	96.822	0.531
pilC	Acinetobacter baumannii D1279779	52.897	97.066	0.513
pilC	Acinetobacter baylyi ADP1	52.764	97.311	0.513
pilG	Neisseria gonorrhoeae MS11	52.393	97.066	0.509
pilG	Neisseria meningitidis 44/76-A	52.141	97.066	0.506
pilC	Vibrio campbellii strain DS40M4	40.796	98.289	0.401
pilC	Vibrio cholerae strain A1552	40.25	97.8	0.394
pilC	Thermus thermophilus HB27	37.093	97.555	0.362