Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   V8687_RS02390 Genome accession   NZ_CP146610
Coordinates   548723..549994 (-) Length   423 a.a.
NCBI ID   WP_338726448.1    Uniprot ID   -
Organism   Shewanella baltica strain TMP1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 543723..554994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8687_RS02360 (V8687_02355) - 544530..545066 (-) 537 WP_006084374.1 thioredoxin family protein -
  V8687_RS02365 (V8687_02360) mutT 545621..546013 (-) 393 WP_012588718.1 8-oxo-dGTP diphosphatase MutT -
  V8687_RS02370 (V8687_02365) yacG 546090..546299 (-) 210 WP_012588717.1 DNA gyrase inhibitor YacG -
  V8687_RS02375 (V8687_02370) zapD 546373..547107 (-) 735 WP_006083354.1 cell division protein ZapD -
  V8687_RS02380 (V8687_02375) coaE 547100..547717 (-) 618 WP_338726446.1 dephospho-CoA kinase -
  V8687_RS02385 (V8687_02380) pilD 547757..548683 (-) 927 WP_338726447.1 A24 family peptidase Machinery gene
  V8687_RS02390 (V8687_02385) pilC 548723..549994 (-) 1272 WP_338726448.1 type II secretion system F family protein Machinery gene
  V8687_RS02395 (V8687_02390) pilB 550148..551860 (-) 1713 WP_338726449.1 type IV-A pilus assembly ATPase PilB Machinery gene
  V8687_RS02400 (V8687_02395) - 551955..552377 (-) 423 WP_338726450.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  V8687_RS02405 (V8687_02400) nadC 553058..553939 (-) 882 WP_006083348.1 carboxylating nicotinate-nucleotide diphosphorylase -
  V8687_RS02410 (V8687_02405) ampD 554210..554773 (+) 564 WP_338726451.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46020.20 Da        Isoelectric Point: 10.2290

>NTDB_id=943350 V8687_RS02390 WP_338726448.1 548723..549994(-) (pilC) [Shewanella baltica strain TMP1]
MATATTTRKPRTKKAEQKSQPKIYTFEWKGVNRDGKKTAGELRGATAAEIRSQLKSQGVTPKSVRKQSSALFKLGDPKIT
PMDVAVMTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLGNILSEIQSGIPLSDAMRPHRRYFDELYVDLVAAGEHSG
SLDLVFDRVATYREKSEALKSKIKKAMFYPAAVVIVAILVTSLLLLFVVPQFEEIFKGFGAELPAFTQLVLQISRGLQSS
WYIFLAAIVGGVFLFVRAHRNSQIVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMQTTGLFPDMLVQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKVVGG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=943350 V8687_RS02390 WP_338726448.1 548723..549994(-) (pilC) [Shewanella baltica strain TMP1]
ATGGCTACGGCAACGACCACAAGAAAGCCTCGCACCAAGAAAGCCGAGCAAAAGAGCCAACCTAAAATCTATACCTTTGA
ATGGAAAGGTGTTAATCGCGACGGCAAGAAAACAGCAGGTGAGCTTAGAGGCGCAACCGCCGCCGAAATCCGTAGCCAGT
TAAAATCCCAAGGCGTTACCCCAAAGAGCGTTCGTAAACAGTCATCTGCGCTATTTAAACTAGGTGATCCGAAAATCACC
CCTATGGATGTTGCTGTAATGACTCGCCAAATTGCGACTATGCTAGCGGCGGGCGTACCTTTAGTCACCACAATTGAACT
ACTCGGCCGTGGGCACGAAAAAGCTAAGATGCGGGAACTTTTAGGAAATATCCTCAGTGAAATTCAATCAGGAATTCCTT
TATCAGATGCAATGCGTCCTCATAGGCGTTACTTCGATGAACTTTATGTTGACCTAGTTGCAGCCGGTGAACATTCAGGT
TCACTAGACTTGGTTTTTGATCGCGTAGCTACCTACAGAGAAAAATCAGAAGCACTGAAATCAAAAATTAAGAAGGCTAT
GTTCTACCCTGCTGCAGTTGTCATAGTCGCAATCTTAGTCACCTCATTATTATTATTGTTTGTGGTGCCTCAATTTGAGG
AGATTTTTAAGGGGTTTGGCGCTGAACTCCCCGCCTTTACTCAATTAGTACTACAAATTTCCCGCGGCTTACAATCCTCT
TGGTATATCTTCTTAGCCGCTATCGTCGGCGGAGTATTTTTGTTCGTTCGAGCCCACAGAAACTCACAAATTGTACGAGA
TAGAGTCGATGAAGCTGTGCTTAAAATCCCCGCTATTGGGCCTATATTACATAAAGGTGCCATGGCACGATTCGCCCGCA
CTTTAGCAACTACTTTCGCCGCGGGCGTGCCGTTAATTGATGGTCTAGAGTCTGCCGCTGGCGCATCGGGTAATGCGGTA
TACCGCAAAGCCATTTTAAAAATCCGTCAAGAAGTGATGGCGGGGATGCAGATGAATGTGGCTATGCAGACCACTGGACT
TTTCCCCGACATGTTAGTGCAAATGGTGATGATAGGCGAAGAATCAGGTTCACTGGATAACATGCTCAATAAAGTATCAA
CCATTTACGAAATGCAAGTAGATGATGCCGTTGATGGCTTATCAAGCCTGATAGAACCGATTATGATGGTGGTAATCGGT
ACTGTCGTCGGCGGGTTAATTGTTGCTATGTACTTACCAATATTCCAGATGGGTAAAGTAGTTGGCGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.545

93.617

0.511
  pilC Acinetobacter baumannii D1279779

50

94.09

0.47
  pilC Legionella pneumophila strain ERS1305867

48.889

95.745

0.468
  pilC Acinetobacter baylyi ADP1

49.37

93.853

0.463
  pilC Vibrio cholerae strain A1552

47.118

94.326

0.444
  pilC Vibrio campbellii strain DS40M4

44.499

96.69

0.43
  pilG Neisseria meningitidis 44/76-A

42.04

95.035

0.4
  pilG Neisseria gonorrhoeae MS11

42.04

95.035

0.4