Detailed information NTG0943349

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: V8687_RS02385
• Genome accession: NZ_CP146610
• Coordinates: 547757..548683 (-)
• Length: 308 a.a.
• NCBI ID: WP_338726447.1
• Uniprot ID: -
• Organism: Shewanella baltica strain TMP1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 542757..553683

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V8687_RS02355 (V8687_02350)	-	543539..544465 (+)	927	WP_011848012.1	exopolyphosphatase	-
V8687_RS02360 (V8687_02355)	-	544530..545066 (-)	537	WP_006084374.1	thioredoxin family protein	-
V8687_RS02365 (V8687_02360)	mutT	545621..546013 (-)	393	WP_012588718.1	8-oxo-dGTP diphosphatase MutT	-
V8687_RS02370 (V8687_02365)	yacG	546090..546299 (-)	210	WP_012588717.1	DNA gyrase inhibitor YacG	-
V8687_RS02375 (V8687_02370)	zapD	546373..547107 (-)	735	WP_006083354.1	cell division protein ZapD	-
V8687_RS02380 (V8687_02375)	coaE	547100..547717 (-)	618	WP_338726446.1	dephospho-CoA kinase	-
V8687_RS02385 (V8687_02380)	pilD	547757..548683 (-)	927	WP_338726447.1	A24 family peptidase	Machinery gene
V8687_RS02390 (V8687_02385)	pilC	548723..549994 (-)	1272	WP_338726448.1	type II secretion system F family protein	Machinery gene
V8687_RS02395 (V8687_02390)	pilB	550148..551860 (-)	1713	WP_338726449.1	type IV-A pilus assembly ATPase PilB	Machinery gene
V8687_RS02400 (V8687_02395)	-	551955..552377 (-)	423	WP_338726450.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34305.68 Da
• Isoelectric Point: 7.0178

>NTDB_id=943349 V8687_RS02385 WP_338726447.1 547757..548683(-) (pilD) [Shewanella baltica strain TMP1]
MSEFISLLGQSLDQSPWLFIALSFIFAATIGSFLNVVTHRFPVMMKREWQQECNQYLQEYHEEIVNKIGIDQLNKPIDAF
PEKYNLVVPGSACPKCKTAIKPWHNLPVLGWLMLKGKCAACHAPISARYPIIEFITGLLIATLAWHFGPSWQFVFASILT
FVLVALTGIDLDEMLLPDQMTLPLLWLGLITNLNHTFASPTDAIIGAAAGYLSLWSIFWLFKILTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGAVVGITMIVSKRLKQGNPIPFGPYIAAAGWIALLFGQQIVDWYLSTL

Nucleotide

• Length: 927 bp

>NTDB_id=943349 V8687_RS02385 WP_338726447.1 547757..548683(-) (pilD) [Shewanella baltica strain TMP1]
ATGTCAGAATTTATCTCCCTTTTGGGCCAGTCTCTAGACCAGAGTCCTTGGCTCTTTATTGCTCTAAGCTTTATTTTTGC
CGCTACCATTGGTAGTTTTTTAAACGTGGTGACCCACAGATTTCCTGTGATGATGAAACGAGAATGGCAGCAAGAATGTA
ATCAGTATTTGCAGGAATACCACGAAGAGATAGTCAACAAGATAGGAATAGACCAACTCAATAAACCTATTGATGCCTTC
CCTGAAAAATATAATCTTGTTGTTCCGGGCTCAGCCTGCCCTAAGTGCAAAACGGCGATTAAACCTTGGCATAATTTACC
CGTATTAGGCTGGTTAATGCTCAAGGGAAAATGCGCCGCCTGTCACGCCCCTATTTCAGCCCGCTACCCTATTATTGAAT
TCATCACAGGGCTACTTATCGCGACTTTAGCTTGGCATTTTGGTCCAAGCTGGCAGTTTGTTTTTGCGAGCATACTCACC
TTTGTGCTTGTAGCACTGACAGGTATCGATCTTGATGAGATGTTGCTCCCCGACCAAATGACGCTACCGTTGCTTTGGCT
CGGCTTGATCACCAATCTAAATCATACCTTTGCGAGCCCAACCGATGCCATTATCGGCGCGGCGGCAGGCTATTTGAGTC
TATGGTCCATTTTCTGGTTGTTTAAAATCCTCACAGGTAAAGAAGGCATGGGTTATGGCGACTTTAAATTACTCGCCGTG
TTCGGTGCTTGGCTTGGCTGGCAAATGCTGCCGCTGGTGATTTTACTTTCGTCCCTCGTTGGCGCAGTCGTTGGCATCAC
TATGATTGTCAGTAAACGCCTGAAACAAGGGAATCCAATCCCATTTGGCCCCTATATTGCCGCAGCTGGCTGGATAGCCT
TGCTATTTGGACAACAGATTGTCGATTGGTACCTATCGACACTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (158-266)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.186	95.779	0.49
pilD	Vibrio campbellii strain DS40M4	49.66	95.455	0.474
pilD	Acinetobacter baumannii D1279779	47.059	99.351	0.468
pilD	Acinetobacter nosocomialis M2	47.213	99.026	0.468
pilD	Neisseria gonorrhoeae MS11	43.643	94.481	0.412