Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   V7R83_RS11355 Genome accession   NZ_CP146288
Coordinates   2761615..2762847 (+) Length   410 a.a.
NCBI ID   WP_040531671.1    Uniprot ID   -
Organism   Lautropia mirabilis ATCC 51599     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2756615..2767847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7R83_RS11340 (V7R83_11340) - 2756652..2757950 (-) 1299 WP_005674120.1 nitrate/nitrite transporter -
  V7R83_RS11345 (V7R83_11345) - 2758575..2759543 (+) 969 WP_040531668.1 Dyp-type peroxidase -
  V7R83_RS11350 (V7R83_11350) pilB 2759828..2761519 (+) 1692 WP_267878749.1 type IV-A pilus assembly ATPase PilB Machinery gene
  V7R83_RS11355 (V7R83_11355) pilC 2761615..2762847 (+) 1233 WP_040531671.1 type II secretion system F family protein Machinery gene
  V7R83_RS11360 (V7R83_11360) pilD 2763059..2763976 (+) 918 WP_005674126.1 A24 family peptidase Machinery gene
  V7R83_RS11365 (V7R83_11365) coaE 2764155..2764817 (+) 663 WP_040531674.1 dephospho-CoA kinase -
  V7R83_RS11370 (V7R83_11370) zapD 2765013..2765768 (+) 756 WP_005674128.1 cell division protein ZapD -
  V7R83_RS11375 (V7R83_11375) - 2765768..2765989 (+) 222 WP_005674129.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44922.89 Da        Isoelectric Point: 9.9562

>NTDB_id=942563 V7R83_RS11355 WP_040531671.1 2761615..2762847(+) (pilC) [Lautropia mirabilis ATCC 51599]
MTASGAKSATSRPKEFNFVWEGRDRAGKTLRGETRASGETIVVNTLRRQGIVVTRIKKQRYKAARGKIQDKDITLFTRQL
ATMMKAGVPLLQAFDIVAKGTDNGAVAKLFTDIKADVETGTALSQAFRKYPLYFDNLFCNLVGAGEQAGILDDLLDRLAM
YKEKMEAIKAKIKSALFYPTAVMVVAFIVVAVIMLFVVPAFKSVFESFGADLPAPTLFVMALSDYFVQNWYIIFGGIGLG
IYFFLQAWKRSPKMQMFMDRLFLKLPIFGPVIRKATIARWLRTLSTMFAAGVPLVEALDSVGGAAGNIVYLQATKKIQQE
VSTGTSLTVAMNNANVFPNMVLQMASIGEESGSLDSMLGKSADVYEREVDDAVESLSSLMEPLIMVVLGTLIGGLVVAMY
LPIFKLGQVV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=942563 V7R83_RS11355 WP_040531671.1 2761615..2762847(+) (pilC) [Lautropia mirabilis ATCC 51599]
ATGACCGCATCGGGCGCAAAGAGCGCCACCTCGCGGCCCAAGGAATTCAACTTCGTCTGGGAAGGGCGCGACCGCGCCGG
TAAGACGCTGCGCGGTGAAACCCGGGCCAGCGGCGAAACCATCGTCGTCAACACCCTGCGCCGGCAGGGCATCGTCGTCA
CGCGCATCAAGAAGCAGCGCTACAAGGCGGCACGCGGCAAGATCCAGGACAAGGACATCACGCTGTTCACGCGCCAGCTG
GCCACCATGATGAAGGCCGGCGTGCCGCTGCTGCAGGCCTTCGACATCGTGGCCAAGGGGACCGACAACGGCGCCGTGGC
CAAGCTCTTCACCGACATCAAGGCCGATGTGGAAACCGGTACCGCGCTGTCGCAAGCCTTCCGCAAGTATCCCCTGTACT
TCGACAACCTCTTCTGCAACCTGGTGGGCGCGGGTGAACAGGCCGGTATTCTGGACGACCTGCTGGACCGGCTGGCCATG
TACAAGGAGAAGATGGAGGCCATCAAGGCCAAGATCAAATCCGCCCTCTTCTACCCCACGGCCGTGATGGTGGTGGCCTT
CATCGTGGTGGCGGTGATCATGCTGTTCGTGGTTCCCGCCTTCAAGAGCGTGTTCGAGAGCTTCGGCGCCGACCTGCCCG
CTCCCACGCTGTTCGTGATGGCGCTGTCGGACTACTTCGTCCAGAACTGGTACATCATCTTCGGCGGCATCGGCCTGGGC
ATCTACTTCTTCCTGCAGGCCTGGAAGCGCTCGCCCAAGATGCAGATGTTCATGGACCGGCTGTTCCTGAAGCTGCCCAT
CTTCGGGCCGGTCATCCGCAAGGCCACCATCGCGCGCTGGCTGCGCACGCTGTCCACCATGTTCGCTGCTGGCGTGCCGC
TGGTCGAAGCCCTGGACTCGGTGGGCGGCGCCGCAGGCAACATCGTCTACCTGCAGGCCACCAAGAAGATCCAGCAGGAA
GTCTCCACCGGTACCAGCCTGACGGTGGCCATGAACAACGCCAACGTCTTCCCCAACATGGTGCTGCAGATGGCCTCCAT
CGGCGAGGAATCCGGTTCGCTGGACTCCATGCTGGGCAAGTCCGCCGACGTGTATGAGCGCGAGGTGGACGATGCGGTGG
AAAGCCTCTCCTCCCTGATGGAACCGCTGATCATGGTGGTGCTGGGCACGCTGATCGGTGGTCTGGTGGTGGCCATGTAT
CTGCCCATCTTCAAGCTGGGTCAGGTAGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.598

98.293

0.527
  pilC Acinetobacter baylyi ADP1

53.149

96.829

0.515
  pilC Acinetobacter baumannii D1279779

52.764

97.073

0.512
  pilC Pseudomonas stutzeri DSM 10701

52.658

96.341

0.507
  pilG Neisseria gonorrhoeae MS11

51.759

97.073

0.502
  pilG Neisseria meningitidis 44/76-A

51.508

97.073

0.5
  pilC Vibrio campbellii strain DS40M4

40.741

98.78

0.402
  pilC Vibrio cholerae strain A1552

41.206

97.073

0.4
  pilC Thermus thermophilus HB27

37.845

97.317

0.368