Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AAEM60_RS10280 Genome accession   NZ_CP145886
Coordinates   2059071..2060306 (+) Length   411 a.a.
NCBI ID   WP_299740990.1    Uniprot ID   -
Organism   Rossellomorea sp. y25     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2054071..2065306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEM60_RS10255 (V2W31_10255) - 2055307..2056023 (+) 717 WP_299740980.1 SDR family oxidoreductase -
  AAEM60_RS10260 (V2W31_10260) - 2056113..2056370 (+) 258 WP_044337337.1 DUF3243 domain-containing protein -
  AAEM60_RS10265 (V2W31_10265) - 2056634..2057425 (+) 792 WP_113968160.1 DUF3388 domain-containing protein -
  AAEM60_RS10270 (V2W31_10270) - 2057442..2058338 (+) 897 WP_299740986.1 helix-turn-helix domain-containing protein -
  AAEM60_RS10275 (V2W31_10275) pgsA 2058421..2058999 (+) 579 WP_149155565.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AAEM60_RS10280 (V2W31_10280) cinA 2059071..2060306 (+) 1236 WP_299740990.1 competence/damage-inducible protein A Machinery gene
  AAEM60_RS10285 (V2W31_10285) recA 2060606..2061643 (+) 1038 WP_044337332.1 recombinase RecA Machinery gene
  AAEM60_RS10290 (V2W31_10290) rny 2062092..2063651 (+) 1560 WP_341357873.1 ribonuclease Y -
  AAEM60_RS10295 (V2W31_10295) - 2063818..2064621 (+) 804 WP_299740994.1 TIGR00282 family metallophosphoesterase -
  AAEM60_RS10300 (V2W31_10300) spoVS 2064759..2065019 (+) 261 WP_034760060.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44774.28 Da        Isoelectric Point: 6.2483

>NTDB_id=940903 AAEM60_RS10280 WP_299740990.1 2059071..2060306(+) (cinA) [Rossellomorea sp. y25]
MNAEIIAVGSELLLGQIVNSNAQYISEQLAEMGVNVYYHTSVGDNPERLHHAITVAQERADLLIFTGGLGPTKDDLTKET
IAKSLGTTLTMDEDALESIKSYFNKVNREMTPNNEKQALILAGSRVLKNEHGMAPGMLLKKDGKAYMLLPGPPSEMKPMF
SKYGKQAIFTLLKKREIIHSRVLRFFGIGEAQLETELEDLIDKQTNPTIAPLAADGEVTLRLTAKHESKDIATSLLDTVE
KKIMVIAGDYFYGYNQDSLVEVGFKLLKEKGLTLSCAESLTGGLFQAQLASLPGASSILNGGVVCYQDEVKTTILSVKES
TLNEHTTVSEQCARELAENVRALFSSDIGISFTGVAGPGPHEGQPAGTVWIGLSIKDQPTKAFLLNLGGGRNANRKRTAK
YGWHYLIKELS

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=940903 AAEM60_RS10280 WP_299740990.1 2059071..2060306(+) (cinA) [Rossellomorea sp. y25]
ATGAATGCAGAAATCATAGCGGTCGGATCTGAACTACTATTAGGTCAAATCGTCAATTCTAATGCTCAATACATATCAGA
GCAACTAGCTGAAATGGGTGTGAATGTCTATTACCACACTAGTGTGGGAGACAACCCAGAGCGGTTGCATCATGCGATTA
CAGTAGCTCAAGAAAGAGCAGACCTGTTAATTTTCACGGGTGGACTTGGACCGACGAAGGATGATTTAACGAAAGAAACA
ATAGCGAAGTCATTAGGTACAACATTGACCATGGACGAAGATGCGTTGGAATCAATAAAAAGCTACTTTAACAAAGTAAA
TCGGGAGATGACCCCCAACAATGAAAAGCAGGCTCTCATTTTAGCGGGTTCCAGAGTATTGAAGAACGAACACGGTATGG
CTCCTGGCATGTTATTGAAAAAGGATGGTAAAGCATACATGCTTTTACCCGGTCCCCCATCTGAAATGAAACCTATGTTT
AGTAAATACGGCAAGCAAGCGATTTTTACTTTATTAAAGAAGAGAGAAATCATCCATTCCCGGGTACTGCGCTTTTTCGG
CATTGGGGAAGCTCAGTTGGAAACAGAACTGGAAGACTTGATTGACAAACAAACCAATCCGACCATCGCGCCATTGGCGG
CCGATGGGGAAGTGACCCTGAGGTTGACGGCGAAGCACGAGTCAAAGGATATTGCCACCTCCCTTTTGGATACAGTAGAA
AAAAAAATTATGGTTATTGCAGGAGATTACTTCTACGGCTATAATCAGGATTCTCTCGTTGAGGTAGGATTCAAGTTGCT
AAAAGAGAAAGGTCTCACCTTATCCTGTGCAGAAAGCTTAACCGGTGGACTCTTTCAAGCTCAATTAGCATCGTTACCTG
GAGCTTCCTCTATCCTGAATGGAGGGGTGGTTTGTTACCAGGATGAAGTTAAGACGACGATTTTATCCGTGAAAGAGAGT
ACATTGAACGAACATACAACAGTAAGTGAACAGTGTGCACGTGAACTTGCTGAAAATGTAAGGGCGCTATTCTCATCAGA
TATTGGAATCAGCTTTACAGGAGTAGCCGGCCCGGGACCACACGAAGGTCAGCCTGCAGGAACCGTGTGGATTGGATTGT
CTATAAAAGATCAACCAACTAAAGCGTTTCTATTAAATCTCGGCGGTGGAAGGAATGCTAATCGAAAGAGAACGGCGAAA
TACGGGTGGCATTATTTGATCAAGGAATTGAGTTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-166)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

57.108

99.27

0.567
  cinA Streptococcus mutans UA159

50.363

100

0.506
  cinA Streptococcus mitis SK321

48.325

100

0.491
  cinA Streptococcus mitis NCTC 12261

48.086

100

0.489
  cinA Streptococcus pneumoniae TIGR4

48.086

100

0.489
  cinA Streptococcus pneumoniae Rx1

47.847

100

0.487
  cinA Streptococcus pneumoniae R6

47.847

100

0.487
  cinA Streptococcus pneumoniae D39

47.608

100

0.484
  cinA Streptococcus suis isolate S10

40.876

100

0.409