Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ABUS32_RS04235 Genome accession   NZ_CP169805
Coordinates   893609..894997 (-) Length   462 a.a.
NCBI ID   WP_000048860.1    Uniprot ID   A0A059ZI65
Organism   Acinetobacter baumannii strain HvAb04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 888609..899997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS32_RS04210 fdhD 889041..889832 (+) 792 WP_000187644.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ABUS32_RS04215 - 889952..890344 (+) 393 WP_000119198.1 YkvA family protein -
  ABUS32_RS04220 - 890449..891516 (+) 1068 WP_000706076.1 4-phosphoerythronate dehydrogenase -
  ABUS32_RS04225 epmA 891513..892487 (+) 975 WP_000059548.1 EF-P lysine aminoacylase EpmA -
  ABUS32_RS04230 - 892546..893526 (-) 981 WP_000451853.1 Tim44 domain-containing protein -
  ABUS32_RS04235 radA/sms 893609..894997 (-) 1389 WP_000048860.1 DNA repair protein RadA Machinery gene
  ABUS32_RS04240 - 895328..896418 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  ABUS32_RS04245 - 896531..898024 (+) 1494 WP_001271198.1 sodium:alanine symporter family protein -
  ABUS32_RS04250 - 898344..899750 (+) 1407 WP_000070815.1 amino acid permease -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49728.19 Da        Isoelectric Point: 7.4015

>NTDB_id=940903 ABUS32_RS04235 WP_000048860.1 893609..894997(-) (radA/sms) [Acinetobacter baumannii strain HvAb04]
MSKVKTVYRCEQCGADHLKWAGQCSECGEWNCLNEVKLEPTTAHRARPKVGGYAGQVANITTLNKVSVSHETRLPTGISE
FDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEESLSQVALRAQRLDLPTDQLKVMAETCVERI
CEVLEQERPVVAILDSIQTLYTETLQSAPGGVSQIRESAALLTRYAKNSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY
FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISREGTRPLLVEVQALVDDAQ
GQPRRVALGLEQNRLNMLLAVMHRHGGVQTTGQDVYVNIVGGLKITETGSDLAVLLACASSLRTKALPQQLAVFGEVGLS
GEIRPVPNGQERLKEAAKHGFKYVILPRGNAPQKAIPGVQVIAVARLHEALTEAMQLSDELT

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=940903 ABUS32_RS04235 WP_000048860.1 893609..894997(-) (radA/sms) [Acinetobacter baumannii strain HvAb04]
ATGAGCAAAGTCAAAACTGTTTACCGTTGCGAGCAATGTGGTGCCGATCATCTAAAATGGGCAGGTCAATGTTCAGAGTG
TGGTGAATGGAATTGTCTTAATGAAGTCAAACTAGAACCCACCACTGCTCATCGTGCACGTCCTAAAGTTGGGGGTTATG
CGGGTCAAGTCGCCAATATTACAACGCTTAATAAAGTCTCTGTTTCTCATGAAACCCGTTTACCAACAGGTATTAGCGAA
TTTGACCGTGTGCTTGGTGGTGGCTTGGTGACAGGTTCTGTAGTACTCATTGGTGGTGATCCGGGTATTGGTAAATCGAC
CATTCTTTTACAAACAGCAACTCATATGGCAAGTGCAAAAAGTTCTGCACTTTATATTACGGGTGAGGAATCGCTGTCAC
AGGTTGCCTTACGTGCCCAACGCCTTGACCTACCAACAGACCAGTTAAAAGTCATGGCTGAAACTTGTGTCGAACGCATT
TGTGAAGTTTTAGAACAAGAACGTCCTGTTGTCGCAATTTTGGACTCTATCCAAACGCTTTACACAGAAACGCTTCAATC
TGCGCCGGGTGGGGTTTCACAAATTCGTGAATCTGCTGCGTTATTAACCCGTTATGCAAAAAATAGTGGCACAGCGCTAT
TTATTGTTGGTCACGTGACCAAAGAAGGTGCATTGGCAGGTCCTCGTGTTTTAGAACACATGGTGGACTGCGTACTTTAC
TTTGAAGGCCAATCAGACTCACGTTATCGAATGATTCGTGCAGTGAAAAACCGTTTTGGTGCAGTCAATGAGCTTGGCGT
ATTTGGCATGACCGATAAAGGCTTACGTGAAGTGGCTAACCCTTCTGCTATCTTTTTAAGTCGTTATGATGAAGCCATTC
CTGGTTCAATTGTCATGATTAGCCGTGAAGGAACTCGCCCGCTTTTAGTTGAAGTTCAGGCTTTAGTCGATGATGCTCAA
GGACAACCAAGACGTGTTGCACTTGGTCTTGAACAAAACCGTTTAAACATGCTGCTTGCTGTTATGCATCGTCATGGGGG
TGTACAAACCACCGGACAAGATGTGTATGTCAATATTGTAGGTGGTTTAAAAATTACTGAAACAGGTTCGGACTTGGCTG
TTTTACTTGCATGTGCTTCGAGTTTGCGAACAAAAGCCTTACCTCAGCAGCTTGCAGTTTTTGGTGAAGTGGGGCTTTCA
GGTGAAATCCGCCCTGTACCTAATGGTCAGGAACGTTTAAAAGAAGCAGCAAAACATGGCTTTAAATACGTCATCTTACC
AAGAGGTAACGCCCCGCAAAAAGCAATTCCGGGCGTACAAGTGATTGCTGTTGCCCGCCTGCATGAAGCCTTGACTGAGG
CGATGCAACTTAGTGATGAATTGACATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(75-150)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059ZI65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.171

98.918

0.457
  radA Streptococcus mitis NCTC 12261

43.043

99.567

0.429
  radA Streptococcus pneumoniae D39

42.67

98.918

0.422
  radA Streptococcus pneumoniae TIGR4

42.67

98.918

0.422
  radA Streptococcus mitis SK321

42.67

98.918

0.422
  radA Streptococcus pneumoniae R6

42.67

98.918

0.422
  radA Streptococcus pneumoniae Rx1

42.67

98.918

0.422