Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAEM60_RS10285 Genome accession   NZ_CP145886
Coordinates   2060606..2061643 (+) Length   345 a.a.
NCBI ID   WP_044337332.1    Uniprot ID   -
Organism   Rossellomorea sp. y25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2055606..2066643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEM60_RS10260 (V2W31_10260) - 2056113..2056370 (+) 258 WP_044337337.1 DUF3243 domain-containing protein -
  AAEM60_RS10265 (V2W31_10265) - 2056634..2057425 (+) 792 WP_113968160.1 DUF3388 domain-containing protein -
  AAEM60_RS10270 (V2W31_10270) - 2057442..2058338 (+) 897 WP_299740986.1 helix-turn-helix domain-containing protein -
  AAEM60_RS10275 (V2W31_10275) pgsA 2058421..2058999 (+) 579 WP_149155565.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AAEM60_RS10280 (V2W31_10280) cinA 2059071..2060306 (+) 1236 WP_299740990.1 competence/damage-inducible protein A Machinery gene
  AAEM60_RS10285 (V2W31_10285) recA 2060606..2061643 (+) 1038 WP_044337332.1 recombinase RecA Machinery gene
  AAEM60_RS10290 (V2W31_10290) rny 2062092..2063651 (+) 1560 WP_341357873.1 ribonuclease Y -
  AAEM60_RS10295 (V2W31_10295) - 2063818..2064621 (+) 804 WP_299740994.1 TIGR00282 family metallophosphoesterase -
  AAEM60_RS10300 (V2W31_10300) spoVS 2064759..2065019 (+) 261 WP_034760060.1 stage V sporulation protein SpoVS -
  AAEM60_RS10305 (V2W31_10305) - 2065118..2066044 (+) 927 WP_299741295.1 dipeptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37393.64 Da        Isoelectric Point: 5.0035

>NTDB_id=940904 AAEM60_RS10285 WP_044337332.1 2060606..2061643(+) (recA) [Rossellomorea sp. y25]
MSDRKAALDMALKQIEKQFGKGSIMKLGEQTDRKVVTCPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPEYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDAIVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIVDLGSELDIVQKSGAWYSYNEERLGQGRENAKIFLKENPEIRSEIMLK
IREHYGLDTGRAETDDQSELSLLED

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=940904 AAEM60_RS10285 WP_044337332.1 2060606..2061643(+) (recA) [Rossellomorea sp. y25]
GTGAGCGATCGTAAAGCAGCCTTAGATATGGCGTTAAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATAATGAAACT
GGGGGAGCAAACTGATAGAAAAGTAGTAACATGCCCAAGTGGTTCATTAGCGTTGGACGCAGCTTTGGGAGTTGGCGGAT
ATCCTCGAGGAAGAATTATAGAGGTATATGGTCCGGAATCGTCTGGTAAAACAACAGTAGCACTTCATGCCATTGCAGAA
GTTCAAGCTCAAGGCGGTCAGGCTGCATTTATCGATGCAGAGCACGCACTTGATCCTGAATATGCTCAAAAGCTTGGGGT
AAACATAGATGAATTATTACTTTCTCAACCGGATACAGGTGAGCAGGCACTGGAAATTGCTGAAGCTTTAGTACGTAGTG
GAGCGGTAGACGCAATCGTTATTGACTCGGTTGCGGCGCTTGTACCGAAAGCAGAAATTGAAGGAGAGATGGGAGATGCT
CACGTAGGTCTTCAAGCCCGTTTAATGTCACAGGCTCTTCGTAAGCTTTCAGGTGCAATTAACAAATCGAAAACCATCGC
GATTTTCATTAACCAAATTCGTGAAAAGGTTGGAGTCATGTTTGGAAATCCTGAGACGACTCCTGGTGGACGCGCACTGA
AATTCTATTCATCTGTACGTTTAGAAGTCCGTCGCGCTGAAACACTTAAGCAAGGGAATGAAATGGTAGGGAATAAAACG
AAGATCAAAGTCGTTAAAAATAAAGTAGCTCCACCTTTCCGTGTAGCTGAAGTAGATATCATGTACGGAGAGGGGATTTC
TAAAGAAGGTGAAATCGTCGATCTTGGGTCTGAGCTGGACATTGTTCAAAAGAGTGGTGCCTGGTACTCTTATAACGAAG
AGCGTCTGGGTCAAGGTCGCGAGAACGCGAAGATTTTCCTTAAAGAAAATCCTGAGATCCGCAGTGAAATCATGTTGAAA
ATCCGTGAACATTACGGTTTGGACACAGGTCGTGCCGAAACGGATGATCAAAGTGAATTAAGTCTTTTAGAGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.058

95.362

0.849
  recA Latilactobacillus sakei subsp. sakei 23K

76

94.203

0.716
  recA Streptococcus pneumoniae R6

67.836

99.13

0.672
  recA Streptococcus pneumoniae TIGR4

67.836

99.13

0.672
  recA Streptococcus pneumoniae Rx1

67.836

99.13

0.672
  recA Streptococcus pneumoniae D39

67.836

99.13

0.672
  recA Streptococcus mutans UA159

70.213

95.362

0.67
  recA Streptococcus mitis NCTC 12261

69.369

96.522

0.67
  recA Streptococcus mitis SK321

69.069

96.522

0.667
  recA Streptococcus pyogenes NZ131

69.512

95.072

0.661
  recA Lactococcus lactis subsp. cremoris KW2

67.576

95.652

0.646
  recA Neisseria gonorrhoeae strain FA1090

64.327

99.13

0.638
  recA Neisseria gonorrhoeae MS11

64.327

99.13

0.638
  recA Neisseria gonorrhoeae MS11

64.327

99.13

0.638
  recA Ralstonia pseudosolanacearum GMI1000

69.329

90.725

0.629
  recA Acinetobacter baylyi ADP1

61.494

100

0.62
  recA Acinetobacter baumannii D1279779

61.628

99.71

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

94.783

0.612
  recA Vibrio cholerae strain A1552

65.421

93.043

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

93.043

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

94.783

0.6
  recA Helicobacter pylori strain NCTC11637

63.692

94.203

0.6
  recA Helicobacter pylori 26695

63.692

94.203

0.6
  recA Pseudomonas stutzeri DSM 10701

64.375

92.754

0.597
  recA Glaesserella parasuis strain SC1401

60.058

99.42

0.597
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.615

94.203

0.571