Detailed information NTG0940758

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: V6U69_RS00730
• Genome accession: NZ_CP145867
• Coordinates: 134227..134655 (+)
• Length: 142 a.a.
• NCBI ID: WP_260312930.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain KSS10
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 129227..139655

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6U69_RS00710 (V6U69_00710)	-	131579..131941 (+)	363	WP_002885749.1	DUF1033 family protein	-
V6U69_RS00715 (V6U69_00715)	comYA	132021..132962 (+)	942	WP_002885658.1	competence type IV pilus ATPase ComGA	Machinery gene
V6U69_RS00720 (V6U69_00720)	comYB	132844..133944 (+)	1101	WP_155115607.1	competence type IV pilus assembly protein ComGB	Machinery gene
V6U69_RS00725 (V6U69_00725)	comYC	133953..134267 (+)	315	WP_037611125.1	competence type IV pilus major pilin ComGC	Machinery gene
V6U69_RS00730 (V6U69_00730)	comYD	134227..134655 (+)	429	WP_260312930.1	competence type IV pilus minor pilin ComGD	Machinery gene
V6U69_RS00735 (V6U69_00735)	comGE	134687..134917 (+)	231	WP_002887015.1	competence type IV pilus minor pilin ComGE	-
V6U69_RS00740 (V6U69_00740)	comYF	134904..135341 (+)	438	WP_022496100.1	competence type IV pilus minor pilin ComGF	Machinery gene
V6U69_RS00745 (V6U69_00745)	comGG	135319..135636 (+)	318	WP_021144683.1	competence type IV pilus minor pilin ComGG	-
V6U69_RS00750 (V6U69_00750)	comYH	135681..136637 (+)	957	WP_410533909.1	class I SAM-dependent methyltransferase	Machinery gene
V6U69_RS00755 (V6U69_00755)	-	136694..137887 (+)	1194	WP_410533911.1	acetate kinase	-
V6U69_RS00760 (V6U69_00760)	-	138138..138335 (+)	198	WP_013991261.1	helix-turn-helix transcriptional regulator	-
V6U69_RS00765 (V6U69_00765)	-	138347..139003 (+)	657	WP_410533913.1	CPBP family intramembrane glutamic endopeptidase	-
V6U69_RS00770 (V6U69_00770)	-	139077..139523 (+)	447	WP_410533915.1	CAAX protease	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15747.19 Da
• Isoelectric Point: 10.3019

>NTDB_id=940758 V6U69_RS00730 WP_260312930.1 134227..134655(+) (comYD) [Streptococcus salivarius strain KSS10]
MRNMVAKAAQWPIRAFTLLESLVTLAVVAFLTMSLSGSVTGIFQQVETNLFYLRFEYLYRDSQRLAAAEGSNVELQLSKD
KISNGKSSLVIPKNIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYQLNMGSGKYKKTVS

Nucleotide

• Length: 429 bp

>NTDB_id=940758 V6U69_RS00730 WP_260312930.1 134227..134655(+) (comYD) [Streptococcus salivarius strain KSS10]
ATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAGAGCCTTTACCTTGTTGGAGAGTCTGGTGACTCTAGCAGT
GGTTGCCTTTCTCACTATGAGTTTATCAGGCTCAGTCACAGGTATTTTTCAGCAGGTTGAGACTAATCTTTTTTATCTGC
GCTTTGAGTACCTATACCGAGATAGTCAGCGCTTGGCAGCGGCGGAAGGGTCCAATGTTGAATTGCAGTTGTCCAAGGAT
AAAATCAGTAACGGAAAATCAAGTCTGGTGATTCCTAAAAATATACATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
CAAAGGAGGCAACTCTAGCCTCACAAAGATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCAGCTTAACATGGGCA
GCGGTAAATATAAAAAGACGGTCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	54.198	92.254	0.5
comYD	Streptococcus mutans UA159	54.198	92.254	0.5
comYD	Streptococcus gordonii str. Challis substr. CH1	42.143	98.592	0.415
comGD/cglD	Streptococcus pneumoniae Rx1	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae D39	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae R6	44.882	89.437	0.401
comGD/cglD	Streptococcus mitis NCTC 12261	44.882	89.437	0.401
comGD/cglD	Streptococcus mitis SK321	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38