Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6U68_RS05590 Genome accession   NZ_CP145866
Coordinates   1152355..1153194 (-) Length   279 a.a.
NCBI ID   WP_410531353.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1147355..1158194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS05570 (V6U68_05560) - 1147819..1148466 (-) 648 WP_060972982.1 nisG -
  V6U68_RS05575 (V6U68_05565) - 1148453..1149181 (-) 729 WP_231724213.1 lantibiotic ABC transporter permease -
  V6U68_RS05580 (V6U68_05570) - 1149183..1149860 (-) 678 WP_107373120.1 ABC transporter ATP-binding protein -
  V6U68_RS05585 (V6U68_05575) topA 1150043..1152187 (-) 2145 WP_410531352.1 type I DNA topoisomerase -
  V6U68_RS05590 (V6U68_05580) dprA 1152355..1153194 (-) 840 WP_410531353.1 DNA-processing protein DprA Machinery gene
  V6U68_RS05595 (V6U68_05585) - 1153261..1154181 (-) 921 WP_410531354.1 ROK family protein -
  V6U68_RS05600 (V6U68_05590) - 1154188..1154958 (-) 771 WP_410531355.1 ribonuclease HII -
  V6U68_RS05605 (V6U68_05595) ylqF 1154945..1155799 (-) 855 WP_410531356.1 ribosome biogenesis GTPase YlqF -
  V6U68_RS05610 (V6U68_05600) - 1155928..1156617 (-) 690 WP_201041384.1 XRE family transcriptional regulator -
  V6U68_RS05615 (V6U68_05605) - 1156712..1157227 (-) 516 WP_410531358.1 transcription repressor NadR -
  V6U68_RS05620 (V6U68_05610) - 1157250..1157777 (-) 528 WP_347100040.1 ECF transporter S component -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 31292.22 Da        Isoelectric Point: 8.4508

>NTDB_id=940718 V6U68_RS05590 WP_410531353.1 1152355..1153194(-) (dprA) [Streptococcus salivarius strain KSS9]
MNNFELFKLKAAGLTNLNILNILDYQKTQDRKLSLRDMAVVSKSKNAVLFMEKYKSLDIKQLKEQFDRFPTLSIFDKEYP
IELKHTYNPPVLLYYQGNLDLLSKPKLAVVGARKCSETGKQSVRKIVSELGNHFTIVSGLARGIDTCAHMEALKNRGNTI
AVIGTGLDVYYPKENKALQDYMAINHLVLTEYGPGEQPLKYHFPERNRIISGLCQGVMVVEAKLRSGSLITCERAMEEGR
DVFAIPGNILDGKSDGCHHLIQEGAKCITTGFDILSEFS

Nucleotide


Download         Length: 840 bp        

>NTDB_id=940718 V6U68_RS05590 WP_410531353.1 1152355..1153194(-) (dprA) [Streptococcus salivarius strain KSS9]
ATGAATAATTTTGAACTTTTTAAACTTAAAGCCGCTGGGTTGACGAATTTGAATATCTTAAATATTTTGGACTATCAAAA
GACACAAGATAGAAAATTGAGTTTACGTGATATGGCAGTGGTATCCAAGTCTAAAAATGCCGTTCTTTTTATGGAAAAAT
ACAAGAGTTTAGATATTAAGCAACTCAAAGAACAATTCGACCGTTTTCCTACGTTATCGATTTTTGATAAAGAATATCCC
ATTGAGCTGAAGCATACCTATAATCCTCCTGTTCTTCTTTATTATCAAGGGAATCTTGATTTACTGAGTAAACCAAAGCT
AGCAGTTGTTGGGGCAAGAAAGTGTTCTGAAACAGGCAAACAGTCTGTTCGCAAAATTGTTAGTGAACTTGGTAATCACT
TTACTATTGTGAGTGGATTGGCGCGTGGGATTGATACTTGTGCGCATATGGAGGCCTTGAAAAATAGGGGGAACACCATT
GCAGTTATCGGGACTGGACTTGATGTTTATTATCCTAAAGAAAATAAAGCTTTGCAGGACTATATGGCTATAAATCATTT
AGTTCTTACTGAATATGGACCGGGTGAACAGCCGCTTAAGTACCACTTTCCTGAACGCAATCGGATTATTTCTGGATTGT
GTCAAGGAGTTATGGTCGTAGAAGCAAAACTTCGCTCAGGAAGTCTGATTACTTGTGAGCGTGCCATGGAAGAAGGTAGA
GATGTTTTTGCTATTCCAGGAAATATTTTAGATGGAAAGTCAGATGGATGCCATCACTTAATTCAAGAGGGTGCAAAGTG
CATTACGACAGGGTTTGACATCCTTTCAGAGTTTTCTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)

DNA recombination-mediator protein A (DNA_processg_A)

(71-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

71.685

100

0.717
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus mitis SK321

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

62.95

99.642

0.627
  dprA Lactococcus lactis subsp. cremoris KW2

58.993

99.642

0.588
  dprA Latilactobacillus sakei subsp. sakei 23K

40.927

92.832

0.38
  dprA Staphylococcus aureus N315

41.296

88.53

0.366
  dprA Acinetobacter baumannii D1279779

45.133

81.004

0.366
  dprA Acinetobacter baumannii strain A118

44.69

81.004

0.362