Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6U67_RS05540 Genome accession   NZ_CP145865
Coordinates   1152560..1153399 (-) Length   279 a.a.
NCBI ID   WP_037611362.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1147560..1158399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS05525 (V6U67_05530) - 1148612..1149271 (-) 660 WP_037611359.1 response regulator transcription factor -
  V6U67_RS05530 (V6U67_05535) - 1149307..1150131 (-) 825 WP_247922685.1 TraX family protein -
  V6U67_RS05535 (V6U67_05540) topA 1150248..1152392 (-) 2145 WP_014633069.1 type I DNA topoisomerase -
  V6U67_RS05540 (V6U67_05545) dprA 1152560..1153399 (-) 840 WP_037611362.1 DNA-processing protein DprA Machinery gene
  V6U67_RS05545 (V6U67_05550) - 1153466..1154386 (-) 921 WP_037611363.1 ROK family protein -
  V6U67_RS05550 (V6U67_05555) - 1154393..1155163 (-) 771 WP_410531162.1 ribonuclease HII -
  V6U67_RS05555 (V6U67_05560) ylqF 1155150..1156004 (-) 855 WP_014634567.1 ribosome biogenesis GTPase YlqF -
  V6U67_RS05560 (V6U67_05565) - 1156133..1156822 (-) 690 WP_013990509.1 XRE family transcriptional regulator -
  V6U67_RS05565 (V6U67_05570) - 1156917..1157432 (-) 516 WP_037611366.1 transcription repressor NadR -
  V6U67_RS05570 (V6U67_05575) - 1157455..1157982 (-) 528 WP_002883896.1 ECF transporter S component -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 31265.19 Da        Isoelectric Point: 8.6585

>NTDB_id=940648 V6U67_RS05540 WP_037611362.1 1152560..1153399(-) (dprA) [Streptococcus salivarius strain KSS8]
MNNFELFKLKAAGLTNLNILNILDYQKTQDRKLSLRDMAVVSKSKNAVLFMEKYKSLDIKQLKEQFDRFPTLSIFDKEYP
IELKHTYNPPVLLYYQGNLDLLSKPKLAVVGARKCSETGKQSVRKIVSELGNHFTIVSGLARGIDTCAHMEALKNKGNTI
AVIGTGLDVYYPKENKALQDYMAKNHLVLSEYGPGEQPLKYHFPERNRIISGLCQGVMVVEAKLRSGSLITCERAMEEGR
DVFAIPGNILDGKSDGCHHLIQEGAKCITTGFDILSEFS

Nucleotide


Download         Length: 840 bp        

>NTDB_id=940648 V6U67_RS05540 WP_037611362.1 1152560..1153399(-) (dprA) [Streptococcus salivarius strain KSS8]
ATGAATAATTTTGAACTTTTTAAACTTAAAGCCGCTGGGTTGACGAATTTGAATATCTTAAATATTTTGGACTATCAAAA
GACACAAGATAGAAAATTGAGTTTACGTGATATGGCAGTGGTATCCAAGTCTAAAAATGCCGTTCTTTTTATGGAAAAAT
ACAAGAGTTTAGATATTAAGCAACTCAAAGAACAATTCGACCGTTTTCCTACGTTATCGATTTTTGATAAAGAATATCCC
ATTGAGCTGAAGCATACCTATAATCCTCCTGTTCTTCTTTATTATCAGGGAAATCTTGATTTACTGAGTAAACCAAAGCT
AGCTGTTGTTGGGGCAAGAAAGTGTTCCGAAACAGGCAAACAGTCTGTTCGCAAAATTGTTAGTGAACTTGGTAATCACT
TTACTATTGTGAGTGGATTGGCGCGTGGGATTGATACTTGTGCGCATATGGAGGCCTTGAAAAATAAGGGGAACACGATT
GCAGTTATCGGGACAGGTCTTGATGTTTATTATCCTAAAGAAAATAAAGCTTTGCAGGACTATATGGCTAAAAATCATTT
AGTTCTTTCAGAATATGGACCGGGTGAGCAGCCGCTTAAGTACCACTTTCCTGAACGCAATCGGATTATTTCTGGATTGT
GTCAAGGAGTTATGGTCGTAGAAGCAAAACTTCGCTCTGGAAGTCTTATTACTTGTGAGCGTGCCATGGAAGAAGGTAGA
GATGTTTTTGCTATTCCAGGAAATATTTTAGATGGAAAGTCAGACGGATGCCATCACTTAATTCAAGAGGGCGCAAAGTG
CATTACGACAGGGTTTGACATCCTATCAGAGTTTTCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

72.401

100

0.724
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.669

99.642

0.634
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.669

99.642

0.634
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.669

99.642

0.634
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.669

99.642

0.634
  dprA/cilB/dalA Streptococcus mitis SK321

63.669

99.642

0.634
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.309

99.642

0.631
  dprA Lactococcus lactis subsp. cremoris KW2

60.072

99.642

0.599
  dprA Latilactobacillus sakei subsp. sakei 23K

41.313

92.832

0.384
  dprA Staphylococcus aureus N315

41.7

88.53

0.369
  dprA Bacillus subtilis subsp. subtilis str. 168

48.571

75.269

0.366
  dprA Acinetobacter baumannii D1279779

44.69

81.004

0.362
  dprA Acinetobacter baumannii strain A118

44.69

81.004

0.362