Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V6U66_RS00340 Genome accession   NZ_CP145864
Coordinates   56478..57746 (+) Length   422 a.a.
NCBI ID   WP_037603794.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 51478..62746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS00310 (V6U66_00310) - 51808..52245 (-) 438 WP_181971222.1 LytTR family DNA-binding domain-containing protein -
  V6U66_RS00315 (V6U66_00315) - 52424..52729 (+) 306 WP_037603797.1 hypothetical protein -
  V6U66_RS00320 (V6U66_00320) mutL 52781..54718 (+) 1938 WP_037603795.1 DNA mismatch repair endonuclease MutL -
  V6U66_RS00325 (V6U66_00325) - 54849..55070 (+) 222 WP_002886321.1 hypothetical protein -
  V6U66_RS00330 (V6U66_00330) ruvA 55228..55818 (+) 591 WP_002886323.1 Holliday junction branch migration protein RuvA -
  V6U66_RS00335 (V6U66_00335) - 55827..56381 (+) 555 WP_002886325.1 DNA-3-methyladenine glycosylase I -
  V6U66_RS00340 (V6U66_00340) cinA 56478..57746 (+) 1269 WP_037603794.1 competence/damage-inducible protein A Machinery gene
  V6U66_RS00345 (V6U66_00345) recA 57782..58921 (+) 1140 WP_002886327.1 recombinase RecA Machinery gene
  V6U66_RS00350 (V6U66_00350) tnpA 59084..59557 (+) 474 WP_002891962.1 IS200/IS605 family transposase -
  V6U66_RS00355 (V6U66_00355) spx 59833..60231 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45690.84 Da        Isoelectric Point: 5.0777

>NTDB_id=940546 V6U66_RS00340 WP_037603794.1 56478..57746(+) (cinA) [Streptococcus salivarius strain KSS7]
MKAELIAVGTEILTGQITNTNAQFLSEKLAELGIDVYFHTAVGDNESRLLSVLDQASQRSDLVILCGGLGPTEDDLTKQT
LAKFLGKELVFDEEASKKLDSFFATRPKHTRTPNNERQAQIVEGAIPLQNPTGLAVGGIITAQGVTYVVLPGPPSELKPM
VNQELIPALTENHSSLYSRVLRFFGVGESQLVTVLKDFIVNQTDPTIAPYAKVGEVTLRLSTKASSQEEADQKLDVLEKQ
IRSTKTLDGKSLSDFIYGYGESNSLAFEAFRLLKNHGKTITAAESLTAGLFQASIADFSGASQVFKGGFVTYSIEEKSKM
LDIPLSQLEEHGVVSHFTAEKMAEGARAKTDSDYGIALTGVAGPDSLEGHPAGTVFIGIADRNQVRSIKVVIGGRSRSDV
RYISTLYAFNLVRQALLQEDMI

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=940546 V6U66_RS00340 WP_037603794.1 56478..57746(+) (cinA) [Streptococcus salivarius strain KSS7]
ATGAAAGCTGAATTGATTGCAGTAGGAACTGAAATCCTAACCGGGCAGATCACCAATACCAATGCCCAATTTTTATCTGA
GAAACTAGCTGAACTAGGAATTGACGTGTATTTTCACACAGCAGTAGGAGACAATGAAAGCCGCCTACTTTCAGTTCTTG
ATCAAGCCAGTCAGCGTAGTGATTTAGTCATACTTTGTGGTGGACTTGGCCCTACTGAGGACGACCTAACCAAGCAAACC
CTGGCTAAATTTTTAGGAAAAGAACTCGTTTTTGATGAGGAGGCTAGTAAAAAACTGGATAGTTTCTTTGCTACTCGTCC
TAAACACACACGAACGCCTAATAATGAACGTCAAGCACAAATTGTTGAGGGGGCTATTCCCTTGCAAAACCCGACAGGTC
TTGCAGTTGGAGGGATTATTACTGCTCAAGGGGTGACCTATGTAGTCTTACCTGGTCCACCAAGTGAACTCAAACCTATG
GTGAATCAAGAACTTATTCCAGCTCTTACTGAGAATCACTCAAGTCTTTATTCGAGAGTCCTAAGATTCTTCGGCGTTGG
AGAAAGTCAATTAGTGACTGTTCTTAAGGATTTTATTGTTAACCAAACAGATCCAACCATAGCTCCATACGCTAAAGTGG
GGGAAGTAACACTTCGCTTGTCAACGAAGGCTTCTTCGCAAGAAGAAGCAGATCAAAAACTAGATGTTTTAGAAAAACAA
ATTCGTTCGACTAAAACTCTAGATGGCAAATCCTTATCTGATTTCATTTATGGATATGGAGAGTCTAATAGTTTAGCCTT
TGAAGCTTTTCGTTTGCTTAAGAACCATGGCAAGACTATCACTGCAGCTGAAAGCCTAACAGCAGGTTTATTTCAGGCTA
GTATTGCTGATTTTTCAGGAGCCTCACAAGTGTTTAAAGGCGGCTTTGTTACTTACAGCATTGAAGAAAAATCTAAAATG
TTGGATATTCCCTTGTCGCAACTAGAAGAACATGGTGTTGTCAGTCATTTTACTGCAGAAAAAATGGCTGAAGGTGCCCG
AGCTAAAACAGATAGCGATTACGGAATTGCACTTACCGGTGTAGCTGGACCAGATTCATTAGAAGGACACCCAGCAGGTA
CAGTATTTATTGGTATTGCTGATAGGAATCAAGTAAGGTCAATCAAGGTTGTTATAGGTGGAAGAAGTCGTTCTGATGTT
AGATATATTAGTACCCTCTATGCCTTTAACCTAGTTCGCCAAGCTTTATTACAAGAAGACATGATTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)

Competence-damaged protein (CinA)

(264-415)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

75.656

99.289

0.751
  cinA Streptococcus mitis NCTC 12261

74.94

99.289

0.744
  cinA Streptococcus pneumoniae TIGR4

74.224

99.289

0.737
  cinA Streptococcus pneumoniae Rx1

73.986

99.289

0.735
  cinA Streptococcus pneumoniae R6

73.986

99.289

0.735
  cinA Streptococcus pneumoniae D39

73.747

99.289

0.732
  cinA Streptococcus mutans UA159

71.703

98.815

0.709
  cinA Streptococcus suis isolate S10

55.529

98.578

0.547
  cinA Bacillus subtilis subsp. subtilis str. 168

45.131

99.763

0.45