Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6U65_RS05400 Genome accession   NZ_CP145863
Coordinates   1121565..1122404 (-) Length   279 a.a.
NCBI ID   WP_048790506.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1116565..1127404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS05385 (V6U65_05385) - 1117620..1118279 (-) 660 WP_048790503.1 response regulator transcription factor -
  V6U65_RS05390 (V6U65_05390) - 1118315..1119139 (-) 825 WP_048790504.1 TraX family protein -
  V6U65_RS05395 (V6U65_05395) topA 1119253..1121397 (-) 2145 WP_048790505.1 type I DNA topoisomerase -
  V6U65_RS05400 (V6U65_05400) dprA 1121565..1122404 (-) 840 WP_048790506.1 DNA-processing protein DprA Machinery gene
  V6U65_RS05405 (V6U65_05405) - 1122471..1123391 (-) 921 WP_048790507.1 ROK family protein -
  V6U65_RS05410 (V6U65_05410) - 1123398..1124168 (-) 771 WP_048790508.1 ribonuclease HII -
  V6U65_RS05415 (V6U65_05415) ylqF 1124155..1125009 (-) 855 WP_014634567.1 ribosome biogenesis GTPase YlqF -
  V6U65_RS05420 (V6U65_05420) - 1125138..1125827 (-) 690 WP_049553740.1 XRE family transcriptional regulator -
  V6U65_RS05425 (V6U65_05425) - 1125925..1126437 (-) 513 WP_070577338.1 transcription repressor NadR -
  V6U65_RS05430 (V6U65_05430) - 1126460..1126987 (-) 528 WP_002883896.1 ECF transporter S component -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 31357.30 Da        Isoelectric Point: 8.6687

>NTDB_id=940511 V6U65_RS05400 WP_048790506.1 1121565..1122404(-) (dprA) [Streptococcus salivarius strain KSS6]
MNHFELFKLKSAGLTNLNILNILDYQETQDRKLSLRDMAVVSKSKNAVLFMEKYKNLDVKQLREQFKRFPTLSIFDKEYP
IELKHTYNPPVLLFYQGNLDLLSKPKLAVVGARKCSETGKQSVRKIVSELGNHFTIVSGLARGIDTCAHMEALKNKGNTI
AVIGTGLDVYYPKENKALQDYMAKNHLVLTEYGPGEQPLKYHFPERNRIISGLCQGVMVVEAKLRSGSLITCERAMEEGR
DVFAIPGNILDGKSDGCHHLIQEGAKCITTGFDILSEFS

Nucleotide


Download         Length: 840 bp        

>NTDB_id=940511 V6U65_RS05400 WP_048790506.1 1121565..1122404(-) (dprA) [Streptococcus salivarius strain KSS6]
ATGAACCACTTTGAACTTTTTAAACTGAAATCTGCTGGGTTGACGAATTTGAATATCTTAAATATTTTAGACTATCAAGA
AACTCAAGATAGAAAATTAAGTCTGCGTGATATGGCAGTTGTCTCTAAGTCTAAAAATGCTGTTCTCTTTATGGAGAAAT
ACAAGAATTTGGATGTCAAGCAACTGAGAGAGCAGTTTAAACGTTTTCCTACACTCTCAATTTTTGATAAGGAGTATCCC
ATTGAGCTAAAGCATACCTATAATCCCCCTGTTCTCTTATTTTATCAAGGAAATCTTGATCTCTTGAGTAAGCCAAAATT
AGCTGTTGTTGGGGCAAGAAAGTGTTCTGAAACAGGCAAACAGTCCGTTCGAAAAATTGTTAGTGAACTTGGGAATCACT
TTACTATTGTTAGTGGATTGGCGCGTGGGATTGATACTTGTGCGCATATGGAAGCCTTGAAAAATAAAGGCAACACTATT
GCAGTTATCGGGACAGGACTTGATGTTTATTATCCTAAAGAAAATAAAGCTTTGCAGGACTATATGGCAAAAAATCATTT
AGTTCTTACAGAATATGGACCAGGTGAACAGCCTCTCAAGTACCACTTTCCTGAACGCAATCGGATTATTTCTGGATTGT
GTCAAGGAGTTATGGTTGTAGAAGCTAAGCTTCGCTCAGGAAGTCTGATTACTTGTGAGCGTGCCATGGAAGAAGGTAGA
GATGTTTTTGCTATTCCAGGAAATATTTTAGATGGCAAGTCAGATGGATGCCATCACCTAATTCAGGAGGGCGCAAAGTG
CATTACGACAGGGTTTGACATCCTTTCAGAGTTTTCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

73.118

100

0.731
  dprA/cilB/dalA Streptococcus mitis SK321

64.029

99.642

0.638
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.669

99.642

0.634
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.669

99.642

0.634
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.669

99.642

0.634
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.669

99.642

0.634
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.309

99.642

0.631
  dprA Lactococcus lactis subsp. cremoris KW2

61.151

99.642

0.609
  dprA Acinetobacter baumannii D1279779

46.903

81.004

0.38
  dprA Acinetobacter baumannii strain A118

46.903

81.004

0.38
  dprA Latilactobacillus sakei subsp. sakei 23K

40.541

92.832

0.376
  dprA Bacillus subtilis subsp. subtilis str. 168

48.571

75.269

0.366
  dprA Glaesserella parasuis strain SC1401

39.08

93.548

0.366