Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6U64_RS04535 Genome accession   NZ_CP145862
Coordinates   1007974..1008813 (+) Length   279 a.a.
NCBI ID   WP_070476066.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1002974..1013813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS04505 (V6U64_04500) - 1003391..1003918 (+) 528 WP_002883896.1 ECF transporter S component -
  V6U64_RS04510 (V6U64_04505) - 1003941..1004456 (+) 516 WP_013990508.1 transcription repressor NadR -
  V6U64_RS04515 (V6U64_04510) - 1004551..1005240 (+) 690 WP_013990509.1 XRE family transcriptional regulator -
  V6U64_RS04520 (V6U64_04515) ylqF 1005369..1006223 (+) 855 WP_070476072.1 ribosome biogenesis GTPase YlqF -
  V6U64_RS04525 (V6U64_04520) - 1006210..1006980 (+) 771 WP_227071942.1 ribonuclease HII -
  V6U64_RS04530 (V6U64_04525) - 1006987..1007907 (+) 921 WP_070476068.1 ROK family protein -
  V6U64_RS04535 (V6U64_04530) dprA 1007974..1008813 (+) 840 WP_070476066.1 DNA-processing protein DprA Machinery gene
  V6U64_RS04540 (V6U64_04535) topA 1008981..1011125 (+) 2145 WP_410537146.1 type I DNA topoisomerase -
  V6U64_RS04545 (V6U64_04540) - 1011308..1011982 (+) 675 WP_064524345.1 ABC transporter ATP-binding protein -
  V6U64_RS04550 (V6U64_04545) - 1011987..1012709 (+) 723 WP_045768654.1 lantibiotic ABC transporter permease -
  V6U64_RS04555 (V6U64_04550) - 1012703..1013353 (+) 651 WP_045768655.1 nisG -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 31279.22 Da        Isoelectric Point: 8.6585

>NTDB_id=940447 V6U64_RS04535 WP_070476066.1 1007974..1008813(+) (dprA) [Streptococcus salivarius strain KSS4]
MNNFELFKLKAAGLTNLNILNILDYQKTQDRKLSLRDMAVVSKSKNAVLFMEKYKSLDIKQLKEQFDRFPTLSIFDKEYP
IELKHTYNPPVLLYYQGNLDLLSKPKLAVVGARKCSETGKQSVRKIVSELGNHFTIVSGLARGIDTCAHMEALKNKGNTI
AVIGTGLDVYYPKENKALQDYMAKNHLVLTEYGPGEQPLKYHFPERNRIISGLCQGVMVVEAKLRSGSLITCERAMEEGR
DVFAIPGNILDGKSDGCHHLIQEGAKCITTGFDILSEFS

Nucleotide


Download         Length: 840 bp        

>NTDB_id=940447 V6U64_RS04535 WP_070476066.1 1007974..1008813(+) (dprA) [Streptococcus salivarius strain KSS4]
ATGAATAATTTTGAACTTTTTAAACTTAAAGCCGCTGGGTTGACGAATTTGAATATATTAAATATTTTGGACTATCAAAA
GACTCAAGATAGAAAATTGAGTTTACGTGATATGGCAGTGGTATCCAAGTCTAAAAATGCCGTTCTTTTTATGGAAAAGT
ATAAGAGTTTAGATATTAAGCAACTCAAAGAACAATTCGACCGTTTTCCTACGTTATCGATTTTTGATAAAGAATATCCT
ATTGAGCTGAAGCATACCTATAATCCTCCTGTTCTCCTTTATTATCAGGGGAATCTTGATTTACTGAGTAAACCAAAGCT
AGCTGTTGTTGGGGCAAGAAAGTGTTCTGAAACAGGCAAACAGTCCGTTCGAAAAATTGTTAGTGAACTTGGGAATCACT
TTACTATTGTGAGTGGATTGGCGCGTGGGATTGATACTTGTGCGCATATGGAGGCCTTGAAAAATAAGGGGAACACCATT
GCAGTTATCGGGACCGGACTTGATGTTTATTATCCTAAAGAAAATAAAGCTTTGCAGGACTATATGGCCAAAAATCATTT
AGTTCTTACAGAATATGGACCGGGTGAACAGCCTCTCAAGTACCACTTTCCTGAACGCAATCGGATTATTTCTGGATTGT
GTCAAGGAGTTATGGTCGTAGAAGCTAAGCTTCGCTCGGGAAGTCTGATTACTTGTGAACGTGCCATGGAAGAAGGAAGA
GATGTCTTTGCTATTCCAGGAAATATTTTAGATGGAAAGTCAGACGGATGCCATCATTTGATTCAAGAGGGCGCAAAGTG
CATTACGACAGGGTTTGACATCCTTTCAGAGTTTTCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

72.043

100

0.72
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus mitis SK321

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

62.95

99.642

0.627
  dprA Lactococcus lactis subsp. cremoris KW2

59.712

99.642

0.595
  dprA Latilactobacillus sakei subsp. sakei 23K

40.927

92.832

0.38
  dprA Staphylococcus aureus N315

41.296

88.53

0.366
  dprA Acinetobacter baumannii D1279779

45.133

81.004

0.366
  dprA Acinetobacter baumannii strain A118

45.133

81.004

0.366
  dprA Bacillus subtilis subsp. subtilis str. 168

48.095

75.269

0.362