Detailed information NTG0940222

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: V6T26_RS00710
• Genome accession: NZ_CP145858
• Coordinates: 130340..130768 (+)
• Length: 142 a.a.
• NCBI ID: WP_253183867.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain KSS11
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 125340..135768

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6T26_RS00690 (V6T26_00690)	-	127691..128053 (+)	363	WP_002887019.1	DUF1033 family protein	-
V6T26_RS00695 (V6T26_00695)	comYA	128134..129075 (+)	942	WP_410541295.1	competence type IV pilus ATPase ComGA	Machinery gene
V6T26_RS00700 (V6T26_00700)	comYB	128957..130057 (+)	1101	WP_410531677.1	competence type IV pilus assembly protein ComGB	Machinery gene
V6T26_RS00705 (V6T26_00705)	comYC	130054..130380 (+)	327	WP_410541296.1	competence type IV pilus major pilin ComGC	Machinery gene
V6T26_RS00710 (V6T26_00710)	comYD	130340..130768 (+)	429	WP_253183867.1	competence type IV pilus minor pilin ComGD	Machinery gene
V6T26_RS00715 (V6T26_00715)	comGE	130740..131030 (+)	291	WP_073689936.1	competence type IV pilus minor pilin ComGE	-
V6T26_RS00720 (V6T26_00720)	comYF	131017..131454 (+)	438	WP_037600123.1	competence type IV pilus minor pilin ComGF	Machinery gene
V6T26_RS00725 (V6T26_00725)	comGG	131432..131749 (+)	318	WP_155222523.1	competence type IV pilus minor pilin ComGG	-
V6T26_RS00730 (V6T26_00730)	comYH	131794..132750 (+)	957	WP_155222522.1	class I SAM-dependent methyltransferase	Machinery gene
V6T26_RS00735 (V6T26_00735)	-	132807..134000 (+)	1194	WP_003095894.1	acetate kinase	-
V6T26_RS00740 (V6T26_00740)	-	134251..134448 (+)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
V6T26_RS00745 (V6T26_00745)	-	134460..135116 (+)	657	WP_410541297.1	CPBP family intramembrane glutamic endopeptidase	-
V6T26_RS00750 (V6T26_00750)	-	135194..135640 (+)	447	WP_013991259.1	hypothetical protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15732.22 Da
• Isoelectric Point: 10.3019

>NTDB_id=940222 V6T26_RS00710 WP_253183867.1 130340..130768(+) (comYD) [Streptococcus salivarius strain KSS11]
MRNMVAKAAQWPIRAFTLLESLVTLAVVAFLTLSLSGSVTGIFQQVETNLFYLRFEYLYRDSQRLAAAEGANVELQLTKD
KISNGKSSLVIPKSIHLDKGQTLMFDAKGGNSSLTKIRFSSDKEVVTYQLNMGSGKYKKTVS

Nucleotide

• Length: 429 bp

>NTDB_id=940222 V6T26_RS00710 WP_253183867.1 130340..130768(+) (comYD) [Streptococcus salivarius strain KSS11]
ATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAGAGCCTTCACCTTGTTGGAGAGTCTGGTGACACTAGCAGT
GGTTGCCTTTCTCACTCTGAGTTTGTCAGGCTCAGTGACAGGTATTTTTCAACAGGTTGAAACTAACCTTTTTTATCTGC
GCTTTGAGTACCTATACCGAGATAGTCAGCGCTTGGCAGCGGCAGAAGGGGCCAATGTTGAATTGCAGTTGACCAAGGAT
AAAATCAGTAACGGAAAATCCAGTCTGGTGATTCCTAAAAGTATTCATCTTGATAAGGGGCAGACGCTAATGTTTGATGC
CAAAGGAGGCAACTCGAGCCTCACCAAGATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCAGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGGTCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	54.962	92.254	0.507
comYD	Streptococcus mutans UA159	54.962	92.254	0.507
comYD	Streptococcus gordonii str. Challis substr. CH1	42.143	98.592	0.415
comGD/cglD	Streptococcus pneumoniae Rx1	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae D39	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae R6	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis NCTC 12261	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis SK321	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	44.882	89.437	0.401
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38