Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6T01_RS05670 Genome accession   NZ_CP145856
Coordinates   1168197..1169036 (-) Length   279 a.a.
NCBI ID   WP_110981439.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1163197..1174036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS05655 (V6T01_05640) - 1164251..1164910 (-) 660 WP_110981436.1 response regulator transcription factor -
  V6T01_RS05660 (V6T01_05645) - 1164946..1165770 (-) 825 WP_110981437.1 TraX family protein -
  V6T01_RS05665 (V6T01_05650) topA 1165885..1168029 (-) 2145 WP_110981438.1 type I DNA topoisomerase -
  V6T01_RS05670 (V6T01_05655) dprA 1168197..1169036 (-) 840 WP_110981439.1 DNA-processing protein DprA Machinery gene
  V6T01_RS05675 (V6T01_05660) - 1169105..1170025 (-) 921 WP_410541509.1 ROK family protein -
  V6T01_RS05680 (V6T01_05665) - 1170036..1170803 (-) 768 WP_410541508.1 ribonuclease HII -
  V6T01_RS05685 (V6T01_05670) ylqF 1170790..1171644 (-) 855 WP_410541507.1 ribosome biogenesis GTPase YlqF -
  V6T01_RS05690 (V6T01_05675) - 1171773..1172462 (-) 690 WP_410541506.1 XRE family transcriptional regulator -
  V6T01_RS05695 (V6T01_05680) - 1172560..1173072 (-) 513 WP_410541505.1 transcription repressor NadR -
  V6T01_RS05700 (V6T01_05685) - 1173095..1173622 (-) 528 WP_347100040.1 ECF transporter S component -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 31287.29 Da        Isoelectric Point: 8.6643

>NTDB_id=940182 V6T01_RS05670 WP_110981439.1 1168197..1169036(-) (dprA) [Streptococcus salivarius strain KSS1]
MNNFELFKLKAAGLTNLNILNILDYQKNQDKKLSLRDMAVVSKSKNAVLFMEEYKNLDIKQLKENFQRFPTLSIFDKEYP
IELKHSYNPPVLLFYQGNIDLLSKPKLAVVGARKCSEIGKQSVRKIVSELGNHFTIVSGLARGIDTCAHMEALKNKGKTI
AVIGTGLDVYYPKENKALQDYMAKNHLVLSEYGPGEQPLKYHFPERNRIISGLCQGVMVVEAKLRSGSLITCERAMEEGR
DVFAIPGNILDGKSEGCHHLIQEGAKCITTGFDILSEFS

Nucleotide


Download         Length: 840 bp        

>NTDB_id=940182 V6T01_RS05670 WP_110981439.1 1168197..1169036(-) (dprA) [Streptococcus salivarius strain KSS1]
ATGAATAACTTTGAACTTTTTAAACTAAAAGCAGCTGGATTGACAAATTTAAATATTCTTAATATTTTAGACTATCAAAA
AAATCAAGATAAAAAACTGAGCTTACGTGATATGGCAGTGGTATCTAAGTCTAAAAATGCAGTTCTCTTTATGGAAGAAT
ACAAGAATTTAGATATTAAGCAGCTTAAGGAAAATTTTCAACGTTTTCCGACCTTATCAATTTTTGATAAGGAGTATCCC
ATTGAGCTGAAGCATAGCTATAATCCACCTGTCCTCCTCTTTTATCAAGGGAATATTGATTTGCTAAGTAAACCAAAGCT
AGCTGTTGTTGGGGCAAGAAAGTGCTCCGAAATAGGCAAACAGTCTGTTCGAAAAATTGTTAGTGAACTTGGGAATCACT
TTACTATTGTGAGTGGTTTGGCGCGTGGGATTGATACTTGTGCACATATGGAGGCCTTGAAAAATAAAGGAAAGACCATT
GCAGTTATCGGGACAGGACTTGATGTTTATTATCCAAAAGAAAATAAAGCTTTGCAGGACTATATGGCCAAAAATCATTT
AGTTCTTTCAGAATATGGACCGGGTGAACAGCCACTTAAATACCATTTCCCTGAACGAAATCGGATAATTTCTGGATTGT
GTCAAGGGGTTATGGTGGTTGAAGCTAAGCTTCGCTCGGGAAGTCTGATTACTTGTGAGCGTGCCATGGAAGAAGGTAGA
GATGTTTTTGCTATTCCAGGAAATATTTTAGATGGAAAGTCAGAAGGATGTCATCACTTGATTCAAGAGGGTGCAAAGTG
CATTACGACAGGGTTTGACATCCTTTCAGAGTTTTCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

73.477

100

0.735
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

64.388

99.642

0.642
  dprA/cilB/dalA Streptococcus pneumoniae D39

64.388

99.642

0.642
  dprA/cilB/dalA Streptococcus pneumoniae R6

64.388

99.642

0.642
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

64.388

99.642

0.642
  dprA/cilB/dalA Streptococcus mitis SK321

64.029

99.642

0.638
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

64.029

99.642

0.638
  dprA Lactococcus lactis subsp. cremoris KW2

60.432

99.642

0.602
  dprA Acinetobacter baylyi ADP1

43.983

86.38

0.38
  dprA Latilactobacillus sakei subsp. sakei 23K

40.154

92.832

0.373
  dprA Bacillus subtilis subsp. subtilis str. 168

49.048

75.269

0.369
  dprA Staphylococcus aureus N315

41.393

87.455

0.362
  dprA Staphylococcus aureus MW2

41.393

87.455

0.362