Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | V6090_RS16555 | Genome accession | NZ_CP145798 |
| Coordinates | 3674656..3674976 (+) | Length | 106 a.a. |
| NCBI ID | WP_279489713.1 | Uniprot ID | - |
| Organism | Aeromonas veronii strain CARB25 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3669656..3679976
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6090_RS16540 (V6090_16540) | yfbV | 3670094..3670534 (-) | 441 | WP_005339116.1 | terminus macrodomain insulation protein YfbV | - |
| V6090_RS16545 (V6090_16545) | - | 3670839..3672041 (+) | 1203 | WP_005349210.1 | acetate kinase | - |
| V6090_RS16550 (V6090_16550) | pta | 3672097..3674277 (+) | 2181 | WP_279489712.1 | phosphate acetyltransferase | - |
| V6090_RS16555 (V6090_16555) | comEA/comE1 | 3674656..3674976 (+) | 321 | WP_279489713.1 | ComEA family DNA-binding protein | Machinery gene |
| V6090_RS16560 (V6090_16560) | galU | 3675072..3675983 (+) | 912 | WP_111900684.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| V6090_RS16565 (V6090_16565) | - | 3676196..3677593 (+) | 1398 | WP_047436211.1 | peptide MFS transporter | - |
| V6090_RS16570 (V6090_16570) | - | 3677668..3678639 (-) | 972 | WP_204484104.1 | response regulator | - |
| V6090_RS16575 (V6090_16575) | - | 3678880..3679578 (+) | 699 | WP_139405566.1 | DnaT-like ssDNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11344.35 Da Isoelectric Point: 9.6564
>NTDB_id=939892 V6090_RS16555 WP_279489713.1 3674656..3674976(+) (comEA/comE1) [Aeromonas veronii strain CARB25]
MLMKKLSAIMLLACLPLFSQPVLAADKAAPKQTTTTEVAKETGKLNINTATLAELTSLKGIGDKKAQAIIDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
MLMKKLSAIMLLACLPLFSQPVLAADKAAPKQTTTTEVAKETGKLNINTATLAELTSLKGIGDKKAQAIIDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=939892 V6090_RS16555 WP_279489713.1 3674656..3674976(+) (comEA/comE1) [Aeromonas veronii strain CARB25]
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGCTGGCCTGCTTGCCACTGTTCAGCCAACCTGTGCTGGCCGCAGATAA
GGCAGCCCCCAAGCAAACAACCACGACCGAGGTCGCCAAGGAGACCGGCAAGCTGAACATCAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCATCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACAGGGACATGATAATAGTCAAATA
A
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGCTGGCCTGCTTGCCACTGTTCAGCCAACCTGTGCTGGCCGCAGATAA
GGCAGCCCCCAAGCAAACAACCACGACCGAGGTCGCCAAGGAGACCGGCAAGCTGAACATCAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCATCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACAGGGACATGATAATAGTCAAATA
A
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
45.133 |
100 |
0.481 |
| comEA | Vibrio cholerae C6706 |
45.631 |
97.17 |
0.443 |
| comEA | Vibrio cholerae strain A1552 |
45.631 |
97.17 |
0.443 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
44.33 |
91.509 |
0.406 |
| comEA | Legionella pneumophila strain ERS1305867 |
41.414 |
93.396 |
0.387 |
| comEA | Legionella pneumophila str. Paris |
41.414 |
93.396 |
0.387 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
64.516 |
58.491 |
0.377 |
| comEA/celA/cilE | Streptococcus pneumoniae D39 |
46.429 |
79.245 |
0.368 |
| comEA/celA/cilE | Streptococcus pneumoniae R6 |
46.429 |
79.245 |
0.368 |
| comEA/celA/cilE | Streptococcus pneumoniae TIGR4 |
46.429 |
79.245 |
0.368 |
| comEA/celA/cilE | Streptococcus pneumoniae Rx1 |
46.429 |
79.245 |
0.368 |