Detailed information NTG0938749

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: LBA42_RS10815
• Genome accession: NZ_CP145437
• Coordinates: 2091556..2092026 (+)
• Length: 156 a.a.
• NCBI ID: WP_000609600.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain HAC 39-1996
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2086556..2097026

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LBA42_RS10785 (LBA42_10785)	-	2086840..2087388 (-)	549	WP_000039617.1	NADPH-dependent FMN reductase	-
LBA42_RS10790 (LBA42_10790)	-	2087709..2088197 (+)	489	WP_000747253.1	DUF5590 domain-containing protein	-
LBA42_RS10795 (LBA42_10795)	-	2088194..2089381 (+)	1188	WP_000777773.1	pyridoxal phosphate-dependent aminotransferase	-
LBA42_RS10800 (LBA42_10800)	-	2089374..2089739 (+)	366	WP_000565218.1	VOC family protein	-
LBA42_RS10805 (LBA42_10805)	asnS	2089755..2091101 (+)	1347	WP_161801414.1	asparagine--tRNA ligase	-
LBA42_RS10810 (LBA42_10810)	rpsF	2091254..2091544 (+)	291	WP_001151785.1	30S ribosomal protein S6	-
LBA42_RS10815 (LBA42_10815)	ssbA	2091556..2092026 (+)	471	WP_000609600.1	single-stranded DNA-binding protein SsbA	Machinery gene
LBA42_RS10820 (LBA42_10820)	rpsR	2092058..2092297 (+)	240	WP_000068664.1	30S ribosomal protein S18	-
LBA42_RS10825 (LBA42_10825)	-	2092592..2093992 (+)	1401	WP_000339025.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	-
LBA42_RS10830 (LBA42_10830)	-	2093994..2094353 (+)	360	WP_000689596.1	S1 RNA-binding domain-containing protein	-
LBA42_RS10835 (LBA42_10835)	-	2094407..2095156 (+)	750	WP_000390783.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
LBA42_RS10840 (LBA42_10840)	-	2095146..2095445 (+)	300	WP_000349601.1	GIY-YIG nuclease family protein	-
LBA42_RS10845 (LBA42_10845)	-	2095516..2096451 (+)	936	WP_000036043.1	manganese-dependent inorganic pyrophosphatase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17420.32 Da
• Isoelectric Point: 5.8989

>NTDB_id=938749 LBA42_RS10815 WP_000609600.1 2091556..2092026(+) (ssbA) [Streptococcus pneumoniae strain HAC 39-1996]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLERRSVREGHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=938749 LBA42_RS10815 WP_000609600.1 2091556..2092026(+) (ssbA) [Streptococcus pneumoniae strain HAC 39-1996]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGACGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.814	100	0.615
ssb	Latilactobacillus sakei subsp. sakei 23K	53.529	100	0.583
ssbB	Bacillus subtilis subsp. subtilis str. 168	56.731	66.667	0.378
ssbB/cilA	Streptococcus pneumoniae TIGR4	50.427	75	0.378
ssbB/cilA	Streptococcus mitis NCTC 12261	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae Rx1	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae D39	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae R6	49.573	75	0.372
ssbB/cilA	Streptococcus mitis SK321	49.573	75	0.372
ssbB	Streptococcus sobrinus strain NIDR 6715-7	53.211	69.872	0.372