Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V4S37_RS09740 Genome accession   NZ_CP144502
Coordinates   1908699..1909169 (-) Length   156 a.a.
NCBI ID   WP_281957977.1    Uniprot ID   -
Organism   Enterococcus cecorum strain 45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1883113..1928214 1908699..1909169 within 0


Gene organization within MGE regions


Location: 1883113..1928214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4S37_RS09600 (V4S37_09600) - 1883113..1885308 (-) 2196 WP_347900278.1 phage tail tip lysozyme -
  V4S37_RS09605 (V4S37_09605) - 1885398..1885724 (-) 327 WP_347900279.1 hypothetical protein -
  V4S37_RS09610 (V4S37_09610) - 1885738..1888119 (-) 2382 WP_047334616.1 VirB4-like conjugal transfer ATPase, CD1110 family -
  V4S37_RS09615 (V4S37_09615) - 1888070..1888333 (-) 264 WP_143349933.1 PrgI family protein -
  V4S37_RS09620 (V4S37_09620) - 1888436..1889251 (-) 816 WP_087663175.1 hypothetical protein -
  V4S37_RS09625 (V4S37_09625) - 1889266..1889493 (-) 228 WP_047334613.1 hypothetical protein -
  V4S37_RS09630 (V4S37_09630) - 1889597..1890535 (-) 939 WP_347900280.1 hypothetical protein -
  V4S37_RS09635 (V4S37_09635) - 1890568..1891575 (-) 1008 WP_347900281.1 isopeptide-forming domain-containing fimbrial protein -
  V4S37_RS09640 (V4S37_09640) - 1891634..1893961 (-) 2328 WP_347900282.1 isopeptide-forming domain-containing fimbrial protein -
  V4S37_RS09645 (V4S37_09645) - 1894101..1894310 (-) 210 WP_047338730.1 helix-turn-helix transcriptional regulator -
  V4S37_RS09650 (V4S37_09650) - 1894445..1895140 (+) 696 WP_281958691.1 hypothetical protein -
  V4S37_RS09655 (V4S37_09655) - 1895141..1895587 (-) 447 WP_114975413.1 hypothetical protein -
  V4S37_RS09660 (V4S37_09660) - 1895685..1898237 (-) 2553 WP_347900283.1 GBS Bsp-like repeat-containing protein -
  V4S37_RS09665 (V4S37_09665) - 1898376..1898654 (-) 279 WP_114975411.1 BRCT domain-containing protein -
  V4S37_RS09670 (V4S37_09670) ssb 1898680..1899120 (-) 441 WP_347900284.1 single-stranded DNA-binding protein -
  V4S37_RS09675 (V4S37_09675) - 1899137..1899688 (-) 552 WP_347900285.1 3'-5' exonuclease -
  V4S37_RS09680 (V4S37_09680) - 1899724..1899999 (-) 276 WP_047339176.1 hypothetical protein -
  V4S37_RS09685 (V4S37_09685) - 1900000..1900761 (-) 762 WP_047242304.1 AAA family ATPase -
  V4S37_RS09690 (V4S37_09690) - 1900763..1901101 (-) 339 WP_047242305.1 hypothetical protein -
  V4S37_RS09695 (V4S37_09695) - 1901388..1901648 (-) 261 WP_347900286.1 hypothetical protein -
  V4S37_RS09700 (V4S37_09700) - 1901663..1902718 (-) 1056 WP_281958666.1 hypothetical protein -
  V4S37_RS09705 (V4S37_09705) - 1903164..1903538 (-) 375 WP_016251094.1 type II toxin-antitoxin system death-on-curing family toxin -
  V4S37_RS09710 (V4S37_09710) - 1905084..1906469 (-) 1386 WP_171332646.1 ISLre2 family transposase -
  V4S37_RS09715 (V4S37_09715) - 1906499..1906750 (-) 252 WP_047334075.1 hypothetical protein -
  V4S37_RS09720 (V4S37_09720) - 1906833..1907651 (-) 819 WP_171332645.1 ParA family protein -
  V4S37_RS09725 (V4S37_09725) - 1907666..1907878 (-) 213 WP_047334073.1 hypothetical protein -
  V4S37_RS09730 (V4S37_09730) - 1907968..1908261 (-) 294 WP_087216392.1 hypothetical protein -
  V4S37_RS09735 (V4S37_09735) - 1908364..1908624 (-) 261 WP_047338919.1 hypothetical protein -
  V4S37_RS09740 (V4S37_09740) ssb 1908699..1909169 (-) 471 WP_281957977.1 single-stranded DNA-binding protein Machinery gene
  V4S37_RS09745 (V4S37_09745) - 1909629..1911791 (-) 2163 WP_171378620.1 type IA DNA topoisomerase -
  V4S37_RS09750 (V4S37_09750) - 1911788..1912207 (-) 420 WP_243192884.1 hypothetical protein -
  V4S37_RS09755 (V4S37_09755) - 1912246..1912971 (-) 726 WP_243180277.1 class A sortase -
  V4S37_RS09760 (V4S37_09760) - 1912980..1913753 (-) 774 WP_052836427.1 thermonuclease family protein -
  V4S37_RS09765 (V4S37_09765) - 1913750..1914907 (-) 1158 WP_243180279.1 DUF3991 domain-containing protein -
  V4S37_RS09770 (V4S37_09770) - 1915040..1917052 (-) 2013 WP_243180281.1 LPD1 domain-containing protein -
  V4S37_RS09775 (V4S37_09775) - 1917052..1917513 (-) 462 WP_171378613.1 hypothetical protein -
  V4S37_RS09780 (V4S37_09780) - 1917541..1917861 (-) 321 WP_168930123.1 hypothetical protein -
  V4S37_RS09785 (V4S37_09785) - 1918022..1919347 (-) 1326 WP_243180283.1 type III toxin-antitoxin system ToxN/AbiQ family toxin -
  V4S37_RS09790 (V4S37_09790) mobP2 1919501..1921396 (-) 1896 WP_243180017.1 MobP2 family relaxase -
  V4S37_RS09795 (V4S37_09795) - 1921415..1921771 (-) 357 WP_047338929.1 hypothetical protein -
  V4S37_RS09800 (V4S37_09800) - 1921755..1922078 (-) 324 WP_168930126.1 hypothetical protein -
  V4S37_RS09805 (V4S37_09805) radC 1922518..1922967 (-) 450 WP_047335108.1 DNA repair protein RadC -
  V4S37_RS09810 (V4S37_09810) - 1923228..1924337 (-) 1110 WP_243180009.1 hypothetical protein -
  V4S37_RS09815 (V4S37_09815) - 1924350..1925111 (-) 762 WP_281957976.1 hypothetical protein -
  V4S37_RS09820 (V4S37_09820) - 1925159..1925509 (-) 351 Protein_1886 C40 family peptidase -
  V4S37_RS09825 (V4S37_09825) - 1925573..1926250 (-) 678 Protein_1887 lysozyme family protein -
  V4S37_RS09830 (V4S37_09830) - 1926268..1928214 (-) 1947 WP_087216189.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17620.47 Da        Isoelectric Point: 6.3633

>NTDB_id=934166 V4S37_RS09740 WP_281957977.1 1908699..1909169(-) (ssb) [Enterococcus cecorum strain 45]
MINNVTLVGRLTRDADLRYTASGVAVATFNLAVNRNYSNQNGERETDFINCVIWRKPAENLANYTRKGSLIGLTGRLQTR
NYENQQGQRVYVTEVIVENFQMLESREVTKNRKQAANQTNQASNPTNTTSQPTQPFMDYSSFGGQSVEISEDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=934166 V4S37_RS09740 WP_281957977.1 1908699..1909169(-) (ssb) [Enterococcus cecorum strain 45]
ATGATTAACAACGTCACATTAGTAGGTAGATTAACAAGAGATGCAGACTTACGATATACTGCATCAGGAGTCGCAGTAGC
AACATTTAATTTAGCGGTTAATCGTAACTATAGCAATCAAAATGGCGAAAGAGAAACCGACTTTATCAATTGTGTGATTT
GGCGAAAACCTGCGGAAAATTTAGCAAATTATACAAGAAAAGGTAGCTTGATTGGTTTAACAGGTAGATTGCAAACAAGG
AATTATGAAAATCAACAAGGACAACGTGTGTATGTGACCGAAGTAATTGTAGAGAATTTTCAGATGTTAGAGTCCAGGGA
AGTCACTAAAAATCGCAAACAGGCAGCAAACCAAACTAATCAAGCATCTAATCCAACTAATACTACATCTCAACCAACAC
AACCATTTATGGATTATTCATCCTTTGGTGGCCAAAGTGTAGAAATTAGTGAAGATGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.647
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.581

100

0.558
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.846

75

0.404
  ssbB/cilA Streptococcus mitis NCTC 12261

50.847

75.641

0.385
  ssbB/cilA Streptococcus pneumoniae TIGR4

50.847

75.641

0.385
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.066

87.821

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

50

75.641

0.378
  ssbB/cilA Streptococcus pneumoniae D39

50

75.641

0.378
  ssbB/cilA Streptococcus pneumoniae R6

50

75.641

0.378
  ssbB/cilA Streptococcus mitis SK321

50

75.641

0.378