Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V4S36_RS09510 Genome accession   NZ_CP144490
Coordinates   1818831..1819301 (-) Length   156 a.a.
NCBI ID   WP_347943559.1    Uniprot ID   -
Organism   Enterococcus cecorum strain 127     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1813831..1824301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4S36_RS09480 (V4S36_09480) - 1815216..1816601 (-) 1386 WP_047338917.1 ISLre2 family transposase -
  V4S36_RS09485 (V4S36_09485) - 1816631..1816882 (-) 252 WP_047334075.1 hypothetical protein -
  V4S36_RS09490 (V4S36_09490) - 1816978..1817796 (-) 819 WP_052845319.1 ParA family protein -
  V4S36_RS09495 (V4S36_09495) - 1817811..1818023 (-) 213 WP_047334073.1 hypothetical protein -
  V4S36_RS09500 (V4S36_09500) - 1818100..1818393 (-) 294 WP_047338918.1 hypothetical protein -
  V4S36_RS09505 (V4S36_09505) - 1818496..1818756 (-) 261 WP_347943558.1 hypothetical protein -
  V4S36_RS09510 (V4S36_09510) ssb 1818831..1819301 (-) 471 WP_347943559.1 single-stranded DNA-binding protein Machinery gene
  V4S36_RS09515 (V4S36_09515) - 1819762..1821924 (-) 2163 WP_347943560.1 DNA topoisomerase -
  V4S36_RS09520 (V4S36_09520) - 1821921..1822340 (-) 420 WP_347943561.1 hypothetical protein -
  V4S36_RS09525 (V4S36_09525) - 1822379..1823104 (-) 726 WP_347943562.1 class A sortase -
  V4S36_RS09530 (V4S36_09530) - 1823113..1823886 (-) 774 WP_347943563.1 thermonuclease family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17531.27 Da        Isoelectric Point: 4.9119

>NTDB_id=934036 V4S36_RS09510 WP_347943559.1 1818831..1819301(-) (ssb) [Enterococcus cecorum strain 127]
MINNVTLVGRLTRDADLRYTASGVAVATFNLAVNRNYSNQNGERETDFINCVIWRKPAENLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESREVTENRKQAANQTNQASNPTNTTSQPTQPFMDYSSFGGQSVEISEDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=934036 V4S36_RS09510 WP_347943559.1 1818831..1819301(-) (ssb) [Enterococcus cecorum strain 127]
ATGATTAACAACGTCACATTAGTAGGTAGATTAACAAGAGATGCAGACTTACGATATACTGCATCAGGAGTCGCAGTAGC
AACATTTAATTTAGCGGTTAATCGTAACTATAGCAATCAAAATGGCGAAAGAGAAACCGACTTTATCAATTGTGTGATTT
GGCGAAAACCTGCGGAAAATTTAGCAAATTACGCAAGAAAAGGGACATTAATTGGTTTGACCGGACGTATTCAAACAAGA
AATTATGAAAACCAACAAGGTCAACGTGTGTATGTAACTGAAGTGGTTGCCGATAATTTTCAATTATTAGAGTCCAGGGA
AGTCACTGAAAATCGCAAACAGGCAGCAAACCAAACTAATCAAGCATCTAATCCAACTAATACTACATCTCAACCAACAC
AACCATTTATGGATTATTCCTCCTTTGGTGGCCAAAGTGTAGAAATTAGTGAAGATGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.647
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.419

100

0.545
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.701

75

0.41
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.255

87.821

0.397
  ssbB/cilA Streptococcus mitis NCTC 12261

50

75.641

0.378
  ssbB/cilA Streptococcus pneumoniae TIGR4

50

75.641

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

49.153

75.641

0.372
  ssbB/cilA Streptococcus pneumoniae D39

49.153

75.641

0.372
  ssbB/cilA Streptococcus pneumoniae R6

49.153

75.641

0.372
  ssbB/cilA Streptococcus mitis SK321

49.153

75.641

0.372