Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V4S36_RS00430 Genome accession   NZ_CP144490
Coordinates   82704..83957 (+) Length   417 a.a.
NCBI ID   WP_347943871.1    Uniprot ID   -
Organism   Enterococcus cecorum strain 127     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 77704..88957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4S36_RS00410 (V4S36_00410) - 79094..79819 (+) 726 WP_087402269.1 ABC transporter ATP-binding protein -
  V4S36_RS00415 (V4S36_00415) - 79816..80892 (+) 1077 WP_347943869.1 ABC transporter permease -
  V4S36_RS00420 (V4S36_00420) - 81012..81950 (+) 939 WP_087213933.1 helix-turn-helix domain-containing protein -
  V4S36_RS00425 (V4S36_00425) pgsA 82061..82639 (+) 579 WP_087402358.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V4S36_RS00430 (V4S36_00430) cinA 82704..83957 (+) 1254 WP_347943871.1 competence/damage-inducible protein A Machinery gene
  V4S36_RS00435 (V4S36_00435) recA 84075..85130 (+) 1056 WP_087663259.1 recombinase RecA Machinery gene
  V4S36_RS00440 (V4S36_00440) rny 85349..86908 (+) 1560 WP_047341283.1 ribonuclease Y -
  V4S36_RS00445 (V4S36_00445) - 87126..87347 (+) 222 WP_204644645.1 helix-turn-helix transcriptional regulator -
  V4S36_RS00450 (V4S36_00450) - 87334..88095 (+) 762 WP_347943872.1 DUF3169 family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45719.12 Da        Isoelectric Point: 4.9283

>NTDB_id=934011 V4S36_RS00430 WP_347943871.1 82704..83957(+) (cinA) [Enterococcus cecorum strain 127]
MNAEIIAVGTEILMGQIVNSNAAYLSEQLANFGINVYYHVAVGDNEKRLTACLERAKSRSDLIVLCGGLGPTQDDLTKQT
VAKFVNQALVYDPTGHARLMDYFAKTKREMTENNLLQALTFKDGRGIANPNGLAVGIYYEDSDHTHYLLLPGPPRELKAM
FCQNVVPLLREINPQDTKLYSRVLRFYGIGESQLVTLLADLIDHQTNPTIAPYAKTNEVTLRLTANASTQDQADRLLDEL
EEKIQALAGAYFYGYGDDFSLAEAMIAQLKEKKRTISVAESLTAGLFASTLGQYPGVSQVFKGGVVTYSLEMKAALLDID
ADYLREVGTVSEACVTLMAKNMQQKAQTDYAIAFSGVAGPDQLEGQAVGTVWMALATPNGVQTYCKQFPHGRNEIRQAAV
MFGLNLVYRALLAEEQA

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=934011 V4S36_RS00430 WP_347943871.1 82704..83957(+) (cinA) [Enterococcus cecorum strain 127]
ATGAATGCAGAAATCATTGCAGTCGGAACAGAGATTTTGATGGGGCAAATCGTTAATTCCAATGCGGCCTATCTTTCAGA
GCAATTAGCCAATTTTGGGATTAATGTTTATTATCATGTCGCAGTTGGAGATAATGAAAAGCGATTGACGGCCTGTCTTG
AACGTGCCAAAAGTCGGAGTGATTTAATCGTGCTTTGTGGTGGTTTGGGGCCAACGCAAGATGATTTAACCAAGCAAACC
GTAGCCAAATTTGTCAATCAAGCATTAGTCTATGATCCAACAGGGCATGCACGTTTGATGGATTATTTTGCCAAGACCAA
GCGAGAAATGACCGAAAATAATTTATTACAAGCCCTCACTTTTAAAGATGGTCGGGGTATTGCCAATCCAAATGGTCTAG
CGGTCGGTATTTATTATGAAGATAGCGATCATACTCACTATTTATTATTGCCTGGGCCACCGCGCGAGTTAAAGGCGATG
TTTTGTCAAAATGTTGTGCCACTTTTGCGTGAAATCAATCCGCAAGATACGAAGCTTTATTCTCGGGTGTTGCGTTTTTA
TGGGATTGGCGAATCACAGTTAGTCACGCTTTTAGCTGATTTAATTGACCATCAGACTAACCCAACGATCGCGCCTTATG
CCAAAACCAATGAAGTGACGTTGCGTTTGACAGCCAATGCATCTACCCAAGATCAAGCGGATAGGTTGCTTGATGAATTA
GAGGAGAAAATTCAAGCTTTGGCCGGTGCTTACTTTTATGGTTATGGGGATGATTTTTCTTTAGCGGAGGCGATGATTGC
CCAATTAAAAGAGAAAAAACGGACAATCAGTGTGGCTGAGAGTTTGACAGCCGGCCTTTTTGCTTCTACCTTGGGACAAT
ATCCGGGGGTGTCACAGGTCTTTAAAGGTGGTGTGGTCACTTATTCGCTTGAGATGAAGGCGGCTTTATTAGATATTGAT
GCCGATTATTTACGAGAAGTCGGGACGGTGAGTGAAGCTTGTGTCACCTTAATGGCTAAAAATATGCAGCAAAAAGCGCA
AACGGATTATGCCATTGCTTTTAGTGGTGTGGCGGGACCGGATCAATTAGAAGGCCAAGCAGTCGGAACGGTCTGGATGG
CTTTGGCGACTCCAAATGGGGTACAGACTTATTGCAAACAGTTCCCCCATGGCCGCAATGAAATCCGCCAAGCCGCTGTG
ATGTTTGGGTTAAATCTCGTTTATCGCGCGCTTTTAGCTGAAGAACAAGCCTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(260-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

51.537

100

0.523
  cinA Streptococcus pneumoniae R6

51.3

100

0.52
  cinA Streptococcus pneumoniae Rx1

51.3

100

0.52
  cinA Streptococcus pneumoniae D39

51.064

100

0.518
  cinA Streptococcus mutans UA159

51.306

100

0.518
  cinA Streptococcus mitis SK321

50.827

100

0.516
  cinA Streptococcus mitis NCTC 12261

50.118

100

0.508
  cinA Bacillus subtilis subsp. subtilis str. 168

44.878

98.321

0.441
  cinA Streptococcus suis isolate S10

47.273

92.326

0.436