Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V4S36_RS00435 Genome accession   NZ_CP144490
Coordinates   84075..85130 (+) Length   351 a.a.
NCBI ID   WP_087663259.1    Uniprot ID   A0A200HYN6
Organism   Enterococcus cecorum strain 127     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 79075..90130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4S36_RS00410 (V4S36_00410) - 79094..79819 (+) 726 WP_087402269.1 ABC transporter ATP-binding protein -
  V4S36_RS00415 (V4S36_00415) - 79816..80892 (+) 1077 WP_347943869.1 ABC transporter permease -
  V4S36_RS00420 (V4S36_00420) - 81012..81950 (+) 939 WP_087213933.1 helix-turn-helix domain-containing protein -
  V4S36_RS00425 (V4S36_00425) pgsA 82061..82639 (+) 579 WP_087402358.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V4S36_RS00430 (V4S36_00430) cinA 82704..83957 (+) 1254 WP_347943871.1 competence/damage-inducible protein A Machinery gene
  V4S36_RS00435 (V4S36_00435) recA 84075..85130 (+) 1056 WP_087663259.1 recombinase RecA Machinery gene
  V4S36_RS00440 (V4S36_00440) rny 85349..86908 (+) 1560 WP_047341283.1 ribonuclease Y -
  V4S36_RS00445 (V4S36_00445) - 87126..87347 (+) 222 WP_204644645.1 helix-turn-helix transcriptional regulator -
  V4S36_RS00450 (V4S36_00450) - 87334..88095 (+) 762 WP_347943872.1 DUF3169 family protein -
  V4S36_RS00455 (V4S36_00455) - 88124..89023 (+) 900 WP_087402278.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37782.98 Da        Isoelectric Point: 4.8258

>NTDB_id=934012 V4S36_RS00435 WP_087663259.1 84075..85130(+) (recA) [Enterococcus cecorum strain 127]
MADDRKTALDAALKKIEKNFGKGSIMKLGEKADQQISTVPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKQGGTAAFIDAEHALDPAYAKKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGD
THVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRSEQLKQGSDIVGNR
TKIKVVKNKVAPPFKVAEIDIMYGEGISQEGELLDMAVNVDLVDKSGAWYSYNGERIGQGRENVKNYMKDHPEMVSELLV
KVRDAYGIGDGSTIEQTENAVETEQETLDLE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=934012 V4S36_RS00435 WP_087663259.1 84075..85130(+) (recA) [Enterococcus cecorum strain 127]
ATGGCCGATGATCGAAAAACAGCCTTAGATGCTGCATTGAAAAAAATAGAAAAAAACTTTGGTAAAGGCTCTATCATGAA
GCTTGGTGAAAAAGCCGACCAACAAATCTCCACCGTACCAAGTGGCTCTCTTGCATTAGATGTCGCTTTAGGCGTAGGGG
GTTATCCAAGAGGGCGGATTATTGAAGTATACGGCCCGGAAAGTTCTGGTAAGACTACGGTTGCTTTACATGCGATTGCC
GAAGTTCAAAAACAAGGCGGAACTGCAGCCTTTATCGATGCCGAACACGCTTTAGATCCAGCCTATGCCAAAAAGCTAGG
CGTGAATATTGACGAATTACTTTTATCACAGCCAGATACCGGTGAACAAGGTCTAGAGATTGCCGATGCCCTTGTTTCTA
GTGGCGCGGTCGATATTATTGTCATTGACTCAGTTGCCGCTTTAGTACCACGTGCCGAAATCGATGGCGAAATGGGGGAT
ACACACGTTGGGTTACAAGCCCGTTTAATGTCTCAAGCCCTACGTAAGTTATCCGGTACGATTAACAAGACGAAGACTAT
TGCGATTTTTATCAACCAAATCCGTGAAAAAGTCGGTGTGATGTTTGGTAATCCAGAAACTACACCTGGTGGACGTGCCT
TGAAGTTCTATGCGACCGTTCGTTTAGAAGTGCGTCGTTCTGAACAATTGAAGCAAGGAAGCGATATTGTCGGTAACCGT
ACCAAGATTAAAGTCGTGAAAAATAAAGTGGCGCCACCATTTAAAGTCGCTGAAATTGATATCATGTATGGCGAAGGAAT
TTCTCAAGAAGGGGAATTGCTAGATATGGCGGTCAATGTTGATTTAGTCGATAAGAGTGGAGCATGGTATTCGTACAATG
GTGAGCGAATTGGACAAGGACGCGAAAATGTCAAAAACTATATGAAAGATCACCCAGAGATGGTCAGTGAGCTTTTAGTC
AAAGTTCGTGACGCTTACGGTATTGGCGATGGTAGCACCATTGAACAAACGGAAAATGCCGTAGAAACCGAACAAGAAAC
ATTAGATTTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A200HYN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.098

93.447

0.758
  recA Bacillus subtilis subsp. subtilis str. 168

77.039

94.302

0.726
  recA Streptococcus mitis NCTC 12261

68.347

100

0.695
  recA Streptococcus pneumoniae R6

69.883

97.436

0.681
  recA Streptococcus pneumoniae TIGR4

69.883

97.436

0.681
  recA Streptococcus pneumoniae Rx1

69.883

97.436

0.681
  recA Streptococcus pneumoniae D39

69.883

97.436

0.681
  recA Streptococcus mitis SK321

71.386

94.587

0.675
  recA Streptococcus pyogenes NZ131

71.299

94.302

0.672
  recA Lactococcus lactis subsp. cremoris KW2

69.851

95.442

0.667
  recA Streptococcus mutans UA159

66.857

99.715

0.667
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.329

93.447

0.601
  recA Ralstonia pseudosolanacearum GMI1000

66.454

89.174

0.593
  recA Neisseria gonorrhoeae strain FA1090

62.918

93.732

0.59
  recA Neisseria gonorrhoeae MS11

62.918

93.732

0.59
  recA Neisseria gonorrhoeae MS11

62.918

93.732

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.272

92.308

0.584
  recA Vibrio cholerae strain A1552

63.272

92.308

0.584
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.31

93.732

0.584
  recA Glaesserella parasuis strain SC1401

60.896

95.442

0.581
  recA Acinetobacter baumannii D1279779

62.654

92.308

0.578
  recA Acinetobacter baylyi ADP1

62.037

92.308

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.606

94.017

0.57
  recA Pseudomonas stutzeri DSM 10701

61.3

92.023

0.564
  recA Helicobacter pylori 26695

59.816

92.877

0.556
  recA Helicobacter pylori strain NCTC11637

59.816

92.877

0.556