Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   V4S36_RS02455 Genome accession   NZ_CP144490
Coordinates   467041..467757 (-) Length   238 a.a.
NCBI ID   WP_087402753.1    Uniprot ID   -
Organism   Enterococcus cecorum strain 127     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 462041..472757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4S36_RS02445 (V4S36_02445) - 463912..465261 (+) 1350 WP_347906449.1 family 20 glycosylhydrolase -
  V4S36_RS02450 (V4S36_02450) - 465281..466681 (+) 1401 WP_347906450.1 glycoside hydrolase family 1 protein -
  V4S36_RS02455 (V4S36_02455) treR 467041..467757 (-) 717 WP_087402753.1 trehalose operon repressor Regulator
  V4S36_RS02460 (V4S36_02460) treP 468093..470096 (+) 2004 WP_171335438.1 PTS system trehalose-specific EIIBC component -
  V4S36_RS02465 (V4S36_02465) - 470305..471489 (+) 1185 WP_347906452.1 nucleoside transporter C-terminal domain-containing protein -
  V4S36_RS02470 (V4S36_02470) - 471704..472540 (+) 837 WP_248624076.1 PRD domain-containing protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27940.86 Da        Isoelectric Point: 6.6191

>NTDB_id=934015 V4S36_RS02455 WP_087402753.1 467041..467757(-) (treR) [Enterococcus cecorum strain 127]
MKIYELIYQQLESEILLGNYPPETFLPSESQLAKQFEASRDTIRKALQQLTNHGYIKKVQGKGSLVLRREQLRFPVSGLT
SYKELENAYGYDSSTQVESLTKLIVKKELAEKTGFEENHEVWSVLRSRKIDGQKVILDWDLIALEFVKELDTEIAKDSLY
AYFEKQLGLEISFAEKEITVDPVKTLDKLYLDLNEQDTHIVSVTSRVFLKNMRQFQYTESHHRLDKFKFHDFARRHQL

Nucleotide


Download         Length: 717 bp        

>NTDB_id=934015 V4S36_RS02455 WP_087402753.1 467041..467757(-) (treR) [Enterococcus cecorum strain 127]
ATGAAAATATATGAATTAATCTATCAACAATTAGAAAGTGAAATCTTATTGGGAAATTATCCCCCAGAAACCTTTTTACC
AAGTGAAAGCCAGTTAGCTAAACAATTTGAAGCCTCACGCGATACGATTCGCAAAGCCTTGCAACAATTGACCAACCATG
GCTATATCAAAAAAGTTCAAGGTAAAGGTTCCCTAGTCTTAAGAAGAGAACAGTTACGTTTCCCTGTTTCTGGTCTAACT
AGTTATAAAGAGTTAGAAAATGCATATGGTTATGATAGCAGCACCCAAGTCGAAAGTTTAACCAAGCTAATTGTCAAAAA
AGAACTGGCTGAAAAAACTGGCTTTGAAGAAAATCATGAAGTTTGGTCCGTCCTAAGAAGCCGTAAAATTGATGGGCAAA
AGGTAATTTTAGATTGGGATTTGATTGCGCTAGAATTTGTGAAGGAGCTTGATACTGAAATTGCCAAAGATTCCTTATAT
GCCTACTTTGAAAAACAACTAGGACTGGAAATCTCTTTTGCTGAAAAAGAAATTACGGTTGACCCTGTTAAAACTTTAGA
TAAATTATATTTGGATTTAAATGAGCAAGATACCCACATTGTTTCGGTGACAAGTCGCGTCTTCTTAAAAAATATGCGGC
AATTTCAATATACAGAAAGCCATCATCGCCTAGACAAGTTTAAATTTCATGATTTTGCTCGTCGCCATCAATTGTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

48.523

99.58

0.483