Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   Aerorivi_RS19905 Genome accession   NZ_CP144176
Coordinates   4296286..4297395 (+) Length   369 a.a.
NCBI ID   WP_394294873.1    Uniprot ID   -
Organism   Aeromonas rivipollensis strain DSM 24593     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4291286..4302395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aerorivi_RS19870 (Aerorivi_03991) - 4291360..4292190 (+) 831 WP_412705564.1 lysostaphin resistance A-like protein -
  Aerorivi_RS19875 (Aerorivi_03992) - 4292269..4292688 (-) 420 WP_025325669.1 DUF4426 domain-containing protein -
  Aerorivi_RS19880 (Aerorivi_03993) yggU 4292693..4293001 (-) 309 WP_111912133.1 DUF167 family protein YggU -
  Aerorivi_RS19885 (Aerorivi_03994) - 4293001..4293552 (-) 552 WP_025325667.1 YggT family protein -
  Aerorivi_RS19890 (Aerorivi_03995) proC 4293576..4294400 (-) 825 WP_163135617.1 pyrroline-5-carboxylate reductase -
  Aerorivi_RS19895 (Aerorivi_03996) - 4294484..4295185 (-) 702 WP_163154439.1 YggS family pyridoxal phosphate-dependent enzyme -
  Aerorivi_RS19900 (Aerorivi_03997) pilT 4295225..4296259 (+) 1035 WP_111912129.1 type IVa pilus ATPase TapT Machinery gene
  Aerorivi_RS19905 (Aerorivi_03998) pilU 4296286..4297395 (+) 1110 WP_394294873.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  Aerorivi_RS19910 (Aerorivi_03999) yaaA 4297428..4298201 (+) 774 WP_025325662.1 peroxide stress protein YaaA -
  Aerorivi_RS19915 (Aerorivi_04000) srmB 4298385..4299608 (-) 1224 WP_408866654.1 ATP-dependent RNA helicase SrmB -
  Aerorivi_RS19920 (Aerorivi_04001) - 4299737..4300447 (+) 711 WP_111912125.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  Aerorivi_RS19925 (Aerorivi_04002) brnQ 4300638..4301945 (+) 1308 WP_408795327.1 branched-chain amino acid transport system II carrier protein -
  Aerorivi_RS19930 (Aerorivi_04003) - 4302032..4302259 (-) 228 WP_025325658.1 hypothetical protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40859.93 Da        Isoelectric Point: 6.3874

>NTDB_id=932590 Aerorivi_RS19905 WP_394294873.1 4296286..4297395(+) (pilU) [Aeromonas rivipollensis strain DSM 24593]
MNMDVLLAALVEQKGSDLFITVDAPPTLKVNGRLAPLGGSPLDKQAALALVRESLDEAHFERYLHTREANYAIHREGLGR
FRVSAFWQQDLPGMVLRRIETRIPTFEELTLPSILQEVAMAKRGLVLFVGATGAGKSTTQAAMIGYRNQHGDGHILTVED
PVEFVHQHGRCLVTQREVGIDTESFNVALKNSMRQAPDVILIGEIRTQETMELAIQFAETGHLCLATLHANNANQALDRI
LHLVPQEKHRQFLFDLSFNLRAIVAQQLLPSLHGQRRVAAFEILLNTPLITDIVRKGEVHRLKEVMTKSGELGMQTFDQA
LFALFCAGQIGYSEALAHADSANDLRLLIKLSGREQLGAGTLDNVTLDE

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=932590 Aerorivi_RS19905 WP_394294873.1 4296286..4297395(+) (pilU) [Aeromonas rivipollensis strain DSM 24593]
ATGAACATGGATGTTCTGCTCGCTGCACTGGTTGAACAAAAGGGCTCGGATCTCTTCATCACGGTCGATGCCCCTCCCAC
CCTCAAGGTCAACGGGCGTCTGGCGCCACTCGGGGGGAGCCCGCTGGACAAGCAGGCGGCACTGGCGCTGGTCAGGGAGA
GCCTGGACGAGGCGCACTTCGAGCGCTACCTGCACACCCGGGAGGCCAACTACGCCATTCACCGCGAGGGGCTGGGGCGA
TTTCGGGTCAGCGCCTTCTGGCAGCAGGATCTGCCGGGCATGGTGCTGCGCCGCATCGAGACCCGCATTCCCACCTTCGA
GGAACTGACGCTACCTTCCATACTGCAGGAGGTCGCCATGGCCAAGCGCGGCCTGGTGCTGTTCGTCGGCGCCACCGGGG
CCGGCAAGTCCACCACCCAGGCGGCCATGATAGGCTACCGCAACCAGCACGGCGACGGCCACATACTGACGGTGGAGGAT
CCGGTGGAGTTCGTCCACCAGCATGGGCGCTGCCTGGTGACCCAGCGGGAGGTGGGGATAGACACCGAGTCCTTCAACGT
GGCCCTCAAGAATTCCATGCGCCAGGCGCCGGACGTCATCCTCATCGGCGAGATCCGCACCCAGGAGACCATGGAGCTGG
CCATCCAGTTTGCCGAGACGGGCCACCTCTGTCTCGCCACCCTCCACGCCAACAATGCCAACCAGGCGCTGGATCGCATC
CTCCATCTGGTGCCGCAGGAGAAGCATCGCCAGTTCCTGTTCGATCTCTCCTTCAACCTGCGCGCCATAGTCGCACAGCA
ACTGCTGCCCTCCCTTCACGGGCAGCGCCGTGTCGCCGCCTTCGAGATACTGCTCAACACCCCGCTCATCACCGACATAG
TCCGCAAGGGAGAGGTGCACAGGCTCAAGGAGGTGATGACCAAATCCGGCGAACTCGGCATGCAGACCTTCGATCAGGCG
CTGTTCGCCCTGTTCTGCGCCGGCCAAATTGGCTACAGTGAGGCCCTTGCCCATGCCGACTCCGCCAACGACCTGCGACT
GCTGATCAAGCTGTCGGGTCGCGAGCAGCTGGGTGCAGGCACACTCGACAACGTGACCCTGGATGAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(115-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Vibrio cholerae strain A1552

60.598

99.729

0.604
  pilU Pseudomonas stutzeri DSM 10701

60.399

95.122

0.575
  pilU Acinetobacter baylyi ADP1

56.091

95.664

0.537
  pilT Legionella pneumophila strain ERS1305867

41.399

92.954

0.385
  pilT Legionella pneumophila strain Lp02

41.399

92.954

0.385
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.774

91.057

0.371
  pilT Vibrio cholerae strain A1552

40.419

90.515

0.366
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

40.419

90.515

0.366
  pilT Acinetobacter baylyi ADP1

39.589

92.412

0.366