Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V1596_RS04900 Genome accession   NZ_CP143756
Coordinates   1026589..1027119 (+) Length   176 a.a.
NCBI ID   WP_006810470.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain ECC-026     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1021589..1032119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1596_RS04880 (V1596_04875) aphA 1021913..1022626 (+) 714 WP_006810474.1 acid phosphatase AphA -
  V1596_RS04885 (V1596_04880) - 1022739..1023155 (+) 417 WP_032673703.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  V1596_RS04890 (V1596_04885) - 1023158..1023511 (+) 354 WP_006810472.1 MmcQ/YjbR family DNA-binding protein -
  V1596_RS04895 (V1596_04890) uvrA 1023515..1026337 (-) 2823 WP_006810471.1 excinuclease ABC subunit UvrA -
  V1596_RS04900 (V1596_04895) ssb 1026589..1027119 (+) 531 WP_006810470.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V1596_RS04905 (V1596_04900) - 1027181..1027462 (-) 282 WP_022646751.1 YjcB family protein -
  V1596_RS04910 (V1596_04905) - 1027496..1027783 (+) 288 WP_148972635.1 hypothetical protein -
  V1596_RS04915 (V1596_04910) - 1028122..1029687 (+) 1566 WP_039272953.1 EAL domain-containing protein -
  V1596_RS04920 (V1596_04915) soxS 1029694..1030020 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  V1596_RS04925 (V1596_04920) soxR 1030119..1030577 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -
  V1596_RS04930 (V1596_04925) - 1030934..1031605 (+) 672 WP_006810467.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18892.89 Da        Isoelectric Point: 5.2456

>NTDB_id=931241 V1596_RS04900 WP_006810470.1 1026589..1027119(+) (ssb) [Enterobacter hormaechei strain ECC-026]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=931241 V1596_RS04900 WP_006810470.1 1026589..1027119(+) (ssb) [Enterobacter hormaechei strain ECC-026]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCAACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGCAAATGGACCGATCAGTCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTAAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGCCAGAACCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTTAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCT
GCACCGTCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.222

100

0.79
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.597
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.369