Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V1565_RS05025 Genome accession   NZ_CP143691
Coordinates   1038061..1038585 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei subsp. xiangfangensis strain ECC-181     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1033061..1043585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1565_RS05005 (V1565_05005) aphA 1033385..1034098 (+) 714 WP_126525228.1 acid phosphatase AphA -
  V1565_RS05010 (V1565_05010) - 1034211..1034627 (+) 417 WP_017382627.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  V1565_RS05015 (V1565_05015) - 1034630..1034983 (+) 354 WP_003860288.1 MmcQ/YjbR family DNA-binding protein -
  V1565_RS05020 (V1565_05020) uvrA 1034987..1037809 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  V1565_RS05025 (V1565_05025) ssb 1038061..1038585 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V1565_RS05030 (V1565_05030) - 1038647..1038928 (-) 282 WP_126525227.1 YjcB family protein -
  V1565_RS05035 (V1565_05035) - 1039372..1040772 (+) 1401 WP_003860281.1 sensor domain-containing diguanylate cyclase -
  V1565_RS05040 (V1565_05040) - 1041038..1042603 (+) 1566 WP_003860279.1 EAL domain-containing protein -
  V1565_RS05045 (V1565_05045) soxS 1042610..1042936 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  V1565_RS05050 (V1565_05050) soxR 1043035..1043493 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=930689 V1565_RS05025 WP_003860284.1 1038061..1038585(+) (ssb) [Enterobacter hormaechei subsp. xiangfangensis strain ECC-181]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=930689 V1565_RS05025 WP_003860284.1 1038061..1038585(+) (ssb) [Enterobacter hormaechei subsp. xiangfangensis strain ECC-181]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTACATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAATGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTTAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374