Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q1I82_RS01710 Genome accession   NZ_CP143633
Coordinates   365513..366784 (-) Length   423 a.a.
NCBI ID   WP_330131048.1    Uniprot ID   -
Organism   Shewanella xiamenensis strain 8M34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 360513..371784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q1I82_RS01675 - 360516..361442 (+) 927 WP_330131045.1 exopolyphosphatase -
  Q1I82_RS01680 - 361531..362067 (-) 537 WP_330131046.1 thioredoxin family protein -
  Q1I82_RS01685 mutT 362211..362606 (-) 396 WP_037413635.1 8-oxo-dGTP diphosphatase MutT -
  Q1I82_RS01690 yacG 362693..362902 (-) 210 WP_037413634.1 DNA gyrase inhibitor YacG -
  Q1I82_RS01695 zapD 363012..363746 (-) 735 WP_037413632.1 cell division protein ZapD -
  Q1I82_RS01700 coaE 363739..364356 (-) 618 WP_099457088.1 dephospho-CoA kinase -
  Q1I82_RS01705 pilD 364438..365364 (-) 927 WP_330131047.1 A24 family peptidase Machinery gene
  Q1I82_RS01710 pilC 365513..366784 (-) 1272 WP_330131048.1 type II secretion system F family protein Machinery gene
  Q1I82_RS01715 pilB 366904..368613 (-) 1710 WP_330131049.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q1I82_RS01720 - 368930..370369 (+) 1440 WP_330131050.1 O-antigen ligase family protein -
  Q1I82_RS01725 - 370416..370829 (-) 414 WP_413740188.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46068.39 Da        Isoelectric Point: 10.2770

>NTDB_id=930076 Q1I82_RS01710 WP_330131048.1 365513..366784(-) (pilC) [Shewanella xiamenensis strain 8M34]
MATATTVKKPRPKKIEQKSQPKIYTFEWKGVNRDGQKTSGELRGASAAEVRSKLKSQGVNPKTVRKQSAALFKLGDAKIT
PMDIAMVTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLATILSEIQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSG
SLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILVTALLLLFVVPQFEDIFKGFGAELPAFTQLVLQISRGLQSS
WYIFLGAIVAGVFLFVRAHRNSQIVRDRVDEVILKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKVVSG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=930076 Q1I82_RS01710 WP_330131048.1 365513..366784(-) (pilC) [Shewanella xiamenensis strain 8M34]
ATGGCTACGGCAACCACAGTAAAAAAGCCTCGCCCAAAAAAGATTGAGCAAAAAAGCCAACCTAAAATTTATACCTTTGA
ATGGAAAGGTGTTAACCGCGACGGCCAAAAAACCAGTGGCGAACTGAGGGGGGCCTCTGCTGCTGAGGTTCGTAGCAAGT
TAAAATCTCAAGGGGTAAATCCTAAAACCGTTCGCAAACAATCGGCCGCCTTATTTAAATTAGGCGATGCCAAAATTACC
CCTATGGATATTGCTATGGTGACTCGGCAAATTGCCACCATGCTTGCCGCTGGGGTGCCATTAGTGACTACCATTGAATT
ACTGGGTCGCGGCCATGAAAAAGCAAAAATGCGTGAGCTGTTAGCGACAATTCTATCGGAGATCCAGTCAGGTATTCCGT
TATCTGATGCTTTGCGTCCCCACCGACGTTATTTTGATGATCTTTATGTCGATTTAGTGGCGGCGGGTGAACATTCAGGC
TCACTCGATGTAGTGTTTGATCGTATTGCGACCTACCGTGAAAAATCTGAAGCATTAAAATCTAAGATTAAAAAAGCCAT
GTTTTATCCGGCAGCAGTAGTAATAGTCGCTATTTTAGTAACAGCACTATTATTACTGTTTGTGGTGCCACAATTTGAAG
ATATTTTTAAGGGCTTTGGGGCCGAGTTGCCTGCTTTTACCCAATTAGTGCTGCAAATCTCCCGCGGCTTACAATCCTCT
TGGTATATCTTTTTGGGTGCCATAGTGGCTGGCGTATTTTTATTTGTGAGGGCTCATAGGAACTCGCAAATCGTGAGAGA
CAGAGTTGACGAAGTCATCTTAAAAATTCCAGCTATTGGTCCCATTCTACACAAAGGCGCTATGGCGCGTTTTGCCCGTA
CCTTAGCCACCACCTTTGCCGCTGGTGTCCCCTTAATCGACGGCTTAGAATCAGCCGCAGGGGCATCGGGCAATGCGGTA
TACCGTAAAGCCATTTTAAAAATCCGCCAAGAAGTGATGGCGGGGATGCAAATGAACGTGGCAATGCGAACCACAGGGCT
GTTCCCCGATATGCTGATCCAAATGGTGATGATTGGCGAAGAATCAGGCTCACTTGATAATATGCTTAATAAAGTTTCAA
CTATCTATGAGATGCAAGTCGATGATGCTGTTGATGGTTTATCCAGCCTAATTGAACCTATCATGATGGTGGTCATTGGC
ACTGTTGTTGGTGGCCTTATTGTCGCTATGTATTTACCCATCTTCCAAATGGGTAAAGTGGTTAGTGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

93.617

0.52
  pilC Legionella pneumophila strain ERS1305867

50.248

95.508

0.48
  pilC Acinetobacter baumannii D1279779

50.503

94.09

0.475
  pilC Acinetobacter baylyi ADP1

50.378

93.853

0.473
  pilC Vibrio cholerae strain A1552

48.492

94.09

0.456
  pilC Vibrio campbellii strain DS40M4

44.853

96.454

0.433
  pilG Neisseria meningitidis 44/76-A

41.687

95.272

0.397
  pilG Neisseria gonorrhoeae MS11

41.687

95.272

0.397