Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   Q1I82_RS01705 Genome accession   NZ_CP143633
Coordinates   364438..365364 (-) Length   308 a.a.
NCBI ID   WP_330131047.1    Uniprot ID   -
Organism   Shewanella xiamenensis strain 8M34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359438..370364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q1I82_RS01675 - 360516..361442 (+) 927 WP_330131045.1 exopolyphosphatase -
  Q1I82_RS01680 - 361531..362067 (-) 537 WP_330131046.1 thioredoxin family protein -
  Q1I82_RS01685 mutT 362211..362606 (-) 396 WP_037413635.1 8-oxo-dGTP diphosphatase MutT -
  Q1I82_RS01690 yacG 362693..362902 (-) 210 WP_037413634.1 DNA gyrase inhibitor YacG -
  Q1I82_RS01695 zapD 363012..363746 (-) 735 WP_037413632.1 cell division protein ZapD -
  Q1I82_RS01700 coaE 363739..364356 (-) 618 WP_099457088.1 dephospho-CoA kinase -
  Q1I82_RS01705 pilD 364438..365364 (-) 927 WP_330131047.1 A24 family peptidase Machinery gene
  Q1I82_RS01710 pilC 365513..366784 (-) 1272 WP_330131048.1 type II secretion system F family protein Machinery gene
  Q1I82_RS01715 pilB 366904..368613 (-) 1710 WP_330131049.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34527.03 Da        Isoelectric Point: 7.1240

>NTDB_id=930075 Q1I82_RS01705 WP_330131047.1 364438..365364(-) (pilD) [Shewanella xiamenensis strain 8M34]
MTEFFTLLGHTFDQAPSLFICLSFVFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHADIVKQVEIEKLNKPIDHY
PPKYNLVVPGSACPKCKTAIQPWHNLPILGWLMLRGKCAACHAPISSRYPIIELITGLLVATLAWHFGPSWQFVFAAILT
FVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTNPTDAIIGAAVGYLSLWSIFWLFKLLTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGALVGITLIVTKRNQLANPIPFGPYIAAAGWIALIWGQPIVDWYLSTL

Nucleotide


Download         Length: 927 bp        

>NTDB_id=930075 Q1I82_RS01705 WP_330131047.1 364438..365364(-) (pilD) [Shewanella xiamenensis strain 8M34]
ATGACTGAATTTTTCACTTTATTAGGTCACACCTTTGACCAAGCACCTTCGCTTTTTATTTGCTTAAGTTTTGTGTTTGC
CGCAACTATTGGCAGTTTTTTAAATGTGGTTATTCACCGTTTTCCGGTGATGATGAAGCGCGAATGGCAACAGGAATGCA
ATCAATATCTGCAGGAGTATCATGCAGATATTGTTAAGCAAGTAGAAATAGAAAAACTCAATAAACCGATCGATCACTAT
CCTCCCAAATACAATCTTGTGGTACCTGGCTCTGCTTGCCCTAAATGTAAAACCGCCATCCAGCCTTGGCATAATTTACC
CATTTTAGGTTGGTTAATGTTGAGGGGAAAATGCGCTGCCTGTCATGCCCCCATTTCCTCACGCTATCCGATTATTGAGC
TAATAACAGGGTTACTCGTTGCAACACTCGCCTGGCATTTTGGGCCAAGCTGGCAATTTGTGTTTGCTGCAATACTCACT
TTTGTGTTGATTGCGCTCACCGGAATCGATCTGGATGAAATGCTGCTTCCCGACCAGATGACACTTCCCCTGCTATGGTT
AGGACTACTCATTAACCTCAACCATACCTTTACCAACCCAACCGATGCGATTATTGGTGCCGCAGTAGGCTATTTAAGTT
TATGGTCGATTTTTTGGCTATTTAAGCTGTTAACCGGTAAAGAAGGCATGGGCTATGGTGACTTTAAACTGCTTGCCGTA
TTTGGTGCTTGGCTTGGTTGGCAAATGTTGCCACTGGTGATTTTACTTTCATCCTTAGTGGGTGCCCTCGTAGGCATCAC
GCTGATCGTGACCAAACGTAATCAACTGGCAAATCCGATTCCCTTTGGTCCTTACATTGCCGCCGCAGGTTGGATCGCCC
TAATATGGGGTCAACCTATTGTGGATTGGTATTTAAGTACGTTATAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-147)

Type IV leader peptidase family (Peptidase_A24)

(158-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

51.014

96.104

0.49
  pilD Vibrio campbellii strain DS40M4

49.007

98.052

0.481
  pilD Acinetobacter nosocomialis M2

48

97.403

0.468
  pilD Acinetobacter baumannii D1279779

47.667

97.403

0.464
  pilD Neisseria gonorrhoeae MS11

45.675

93.831

0.429