Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   V1M48_RS12865 Genome accession   NZ_CP143559
Coordinates   598746..599969 (-) Length   407 a.a.
NCBI ID   WP_258455382.1    Uniprot ID   -
Organism   Vibrio harveyi strain WHSS0915     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 593746..604969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1M48_RS12825 (V1M48_12825) rpsP 593806..594054 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  V1M48_RS12830 (V1M48_12830) rimM 594083..594631 (+) 549 WP_005446245.1 ribosome maturation factor RimM -
  V1M48_RS12835 (V1M48_12835) trmD 594659..595402 (+) 744 WP_005446247.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  V1M48_RS12840 (V1M48_12840) rplS 595444..595797 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  V1M48_RS12845 (V1M48_12845) yacG 596164..596358 (-) 195 WP_005446249.1 DNA gyrase inhibitor YacG -
  V1M48_RS12850 (V1M48_12850) zapD 596421..597161 (-) 741 WP_005446251.1 cell division protein ZapD -
  V1M48_RS12855 (V1M48_12855) coaE 597189..597803 (-) 615 WP_017189130.1 dephospho-CoA kinase -
  V1M48_RS12860 (V1M48_12860) pilD 597804..598673 (-) 870 WP_005446255.1 prepilin peptidase Machinery gene
  V1M48_RS12865 (V1M48_12865) pilC 598746..599969 (-) 1224 WP_258455382.1 type II secretion system F family protein Machinery gene
  V1M48_RS12870 (V1M48_12870) pilB 600003..601688 (-) 1686 WP_005446257.1 type IV-A pilus assembly ATPase PilB Machinery gene
  V1M48_RS12875 (V1M48_12875) pilA 601688..602116 (-) 429 WP_009698754.1 type IV pilin protein Machinery gene
  V1M48_RS12880 (V1M48_12880) nadC 602381..603268 (-) 888 WP_029790346.1 carboxylating nicotinate-nucleotide diphosphorylase -
  V1M48_RS12885 (V1M48_12885) ampD 603361..603912 (+) 552 WP_017189135.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44927.16 Da        Isoelectric Point: 10.3829

>NTDB_id=929683 V1M48_RS12865 WP_258455382.1 598746..599969(-) (pilC) [Vibrio harveyi strain WHSS0915]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEVEVRERLDAQHIKIKKLKKGSISFITKISHRVKGKDITVFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTKVIPEFEKMFTGFGAELPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISG
KIISQRSDSFRLLTARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=929683 V1M48_RS12865 WP_258455382.1 598746..599969(-) (pilC) [Vibrio harveyi strain WHSS0915]
ATGAAAACCATCGCTCCACAACTTAAGAACTACCGTTGGAAAGGCATTAATAGCTCGGGTAAAAAAACCTCTGGTAATGT
GCTCGCAATGACAGAAGTCGAGGTAAGAGAGCGCCTTGATGCTCAGCACATCAAGATAAAAAAACTCAAAAAAGGCAGTA
TTTCTTTTATCACCAAGATAAGTCATCGAGTAAAAGGCAAAGACATTACGGTGTTTACTCGTCAAATCGCCACCATGTTG
ATGACTGGCGTCCCTATTGTTCAGGCACTCAAGTTAGTTTCAGAGAACCATAAAAAAGCTGAAATGAAGTCGATTCTAAT
GAGTGTGACGCGAGCGGTAGAAGCAGGGACACCGATGTCGAAAGCCATGCGTACCGCTAGCACGCACTTTGATCCACTTT
ACACCGACTTAATAGCAACAGGTGAGCAGTCCGGTAACTTATCCCAAGTCTTTGAGCGTCTGGCGACCTACCGAGAAAAA
AGCGAGCAGTTGCGTGCAAAGGTTATTAAAGCGCTCATTTACCCGGCGATGGTGGTATTAGTAGCACTTGGGGTTTCTTA
TTTAATGCTGACAAAGGTTATTCCTGAGTTTGAAAAAATGTTTACAGGTTTTGGTGCCGAATTACCCGCCTTCACCCAGA
TGGTACTCAACCTTTCTGCTTGGACCCAAAATTGGGGTCCCTTCATTGGGCTGAGCTTTGTGAGCTTACTCATTTCTGGC
AAAATCATTTCACAACGCTCCGACTCATTTCGTCTTTTGACTGCACGGTCGAGTTTAAGAGTACCTATTTTAGGACCAGT
TTTATCCAAAGCTGCCATTGCGAAGTTTAGCCGTACTTTGGCGACCAGTTTTAGCGCAGGTATTCCTATCCTAACCGCCT
TGAAAACTACCTCAAAAACCTCTGGTAACATGCATTATCAATTGGCAATCGAAGAGGTATATCGAGATACTGCCGCTGGT
ATGCCAATGTACATTGCCATGCGTAACTGTAACGTCTTTCCAGAATTGGTATTGCAAATGGTCATGATTGGTGAAGAGTC
AGGTCGCTTAGATGACATGCTCAACAAGATAGCCGCTATTTATGAGTTCGAAGTCGATAACACCGTCGACAACCTAAGTA
AGATTTTGGAACCGTTGATCATTGTTTTTCTGGGTGTCGTTGTCGGTGGTTTGGTGACAGCAATGTACTTACCAATCTTT
AACTTGATGAGCGTATTGGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

98.034

100

0.98
  pilC Vibrio cholerae strain A1552

74

98.28

0.727
  pilC Acinetobacter baylyi ADP1

41.935

99.017

0.415
  pilC Pseudomonas stutzeri DSM 10701

41.414

97.297

0.403
  pilC Acinetobacter baumannii D1279779

40.447

99.017

0.4
  pilG Neisseria meningitidis 44/76-A

39.173

100

0.396
  pilG Neisseria gonorrhoeae MS11

39.173

100

0.396
  pilC Legionella pneumophila strain ERS1305867

39.356

99.263

0.391