Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | V1M48_RS12875 | Genome accession | NZ_CP143559 |
| Coordinates | 601688..602116 (-) | Length | 142 a.a. |
| NCBI ID | WP_009698754.1 | Uniprot ID | A0A8B3DN92 |
| Organism | Vibrio harveyi strain WHSS0915 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 596688..607116
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V1M48_RS12855 (V1M48_12855) | coaE | 597189..597803 (-) | 615 | WP_017189130.1 | dephospho-CoA kinase | - |
| V1M48_RS12860 (V1M48_12860) | pilD | 597804..598673 (-) | 870 | WP_005446255.1 | prepilin peptidase | Machinery gene |
| V1M48_RS12865 (V1M48_12865) | pilC | 598746..599969 (-) | 1224 | WP_258455382.1 | type II secretion system F family protein | Machinery gene |
| V1M48_RS12870 (V1M48_12870) | pilB | 600003..601688 (-) | 1686 | WP_005446257.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| V1M48_RS12875 (V1M48_12875) | pilA | 601688..602116 (-) | 429 | WP_009698754.1 | type IV pilin protein | Machinery gene |
| V1M48_RS12880 (V1M48_12880) | nadC | 602381..603268 (-) | 888 | WP_029790346.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| V1M48_RS12885 (V1M48_12885) | ampD | 603361..603912 (+) | 552 | WP_017189135.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| V1M48_RS12890 (V1M48_12890) | pdhR | 604317..605084 (+) | 768 | WP_009699648.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14524.57 Da Isoelectric Point: 5.7554
>NTDB_id=929685 V1M48_RS12875 WP_009698754.1 601688..602116(-) (pilA) [Vibrio harveyi strain WHSS0915]
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADADAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADADAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
Nucleotide
Download Length: 429 bp
>NTDB_id=929685 V1M48_RS12875 WP_009698754.1 601688..602116(-) (pilA) [Vibrio harveyi strain WHSS0915]
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACTACAAATATTGATACCTTCATTGCTGATACTGGCACCTTTCCTGCTGATGCCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCGACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACTACAAATATTGATACCTTCATTGCTGATACTGGCACCTTTCCTGCTGATGCCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCGACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae strain A1552 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae C6706 |
51.299 |
100 |
0.556 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
48.951 |
100 |
0.493 |
| pilA | Pseudomonas aeruginosa PAK |
45.27 |
100 |
0.472 |
| pilA | Acinetobacter baumannii strain A118 |
35.294 |
100 |
0.38 |