NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	AB5J51_RS25925	Genome accession	NZ_CP165727
Coordinates	5657979..5658650 (+)	Length	223 a.a.
NCBI ID	WP_030297267.1	Uniprot ID	-
Organism	Streptomyces sp. R33
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5652979..5663650

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J51_RS25890 (AB5J51_25930)	-	5653471..5653935 (+)	465	WP_136224872.1	HD domain-containing protein	-
AB5J51_RS25895 (AB5J51_25935)	-	5654112..5654306 (+)	195	WP_030297273.1	hypothetical protein	-
AB5J51_RS25900 (AB5J51_25940)	-	5654659..5654994 (+)	336	WP_369778757.1	hypothetical protein	-
AB5J51_RS25915 (AB5J51_25955)	tig	5655557..5656954 (+)	1398	WP_369778758.1	trigger factor	-
AB5J51_RS25920 (AB5J51_25960)	clpP	5657275..5657892 (+)	618	WP_053786842.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J51_RS25925 (AB5J51_25965)	clpP	5657979..5658650 (+)	672	WP_030297267.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J51_RS25930 (AB5J51_25970)	clpX	5658804..5660090 (+)	1287	WP_030159377.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AB5J51_RS25935 (AB5J51_25975)	-	5660257..5660529 (+)	273	WP_369778759.1	hypothetical protein	-
AB5J51_RS25940 (AB5J51_25980)	-	5660591..5661514 (-)	924	WP_369778760.1	hypothetical protein	-

Sequence

Protein

Download Length: 223 a.a. Molecular weight: 24574.98 Da Isoelectric Point: 4.7914

                                >NTDB_id=927671 AB5J51_RS25925 WP_030297267.1 5657979..5658650(+) (clpP) [Streptomyces sp. R33]

MVNTQMHMNNLSPASGLYTGAQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD

PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLS

DLEIAANEILRMRDQLETMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIVSTRKNSH

Nucleotide

Download Length: 672 bp

                                >NTDB_id=927671 AB5J51_RS25925 WP_030297267.1 5657979..5658650(+) (clpP) [Streptomyces sp. R33]

ATGGTGAACACCCAGATGCACATGAACAACCTCTCTCCCGCGAGCGGCCTCTACACCGGCGCGCAGGTGGACAACCGCTA

CGTCGTCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG

TGATCTTCCTCGGCGTGCAGATCGACGACGCATCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC

CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGTGGCTCCTTCACCGCGCTGACGGCCATCTACGACACGATGCA

GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTGGCGGCCGGCACGC

CCGGCAAGCGCATGGCGCTGCCGAACGCCCGCGTGCTGATCCACCAGCCGTCCGGCGGCACCGGCCGTGAGCAGCTCTCC

GACCTGGAGATCGCGGCCAACGAGATCCTGCGCATGCGTGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACCACGCC

GATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCGCTCGCGTACGGCCTGATCGACC

AGATCGTCTCGACCCGCAAGAACTCCCACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	52.632	85.202	0.448
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	49.468	84.305	0.417
clpP	Streptococcus pyogenes MGAS315	46.842	85.202	0.399
clpP	Streptococcus pyogenes JRS4	46.842	85.202	0.399
clpP	Streptococcus thermophilus LMD-9	45.876	86.996	0.399
clpP	Streptococcus thermophilus LMG 18311	45.876	86.996	0.399
clpP	Streptococcus mutans UA159	46.316	85.202	0.395
clpP	Lactococcus lactis subsp. cremoris KW2	46.073	85.65	0.395
clpP	Streptococcus pneumoniae D39	45.55	85.65	0.39
clpP	Streptococcus pneumoniae TIGR4	45.55	85.65	0.39
clpP	Streptococcus pneumoniae R6	45.55	85.65	0.39
clpP	Streptococcus pneumoniae Rx1	45.55	85.65	0.39
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	45.026	85.65	0.386

Detailed information NTG0927671