Detailed information NTG0927672

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: AB5J51_RS25930
• Genome accession: NZ_CP165727
• Coordinates: 5658804..5660090 (+)
• Length: 428 a.a.
• NCBI ID: WP_030159377.1
• Uniprot ID: A0A5J6JHR3
• Organism: Streptomyces sp. R33
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5653804..5665090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J51_RS25895 (AB5J51_25935)	-	5654112..5654306 (+)	195	WP_030297273.1	hypothetical protein	-
AB5J51_RS25900 (AB5J51_25940)	-	5654659..5654994 (+)	336	WP_369778757.1	hypothetical protein	-
AB5J51_RS25915 (AB5J51_25955)	tig	5655557..5656954 (+)	1398	WP_369778758.1	trigger factor	-
AB5J51_RS25920 (AB5J51_25960)	clpP	5657275..5657892 (+)	618	WP_053786842.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J51_RS25925 (AB5J51_25965)	clpP	5657979..5658650 (+)	672	WP_030297267.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J51_RS25930 (AB5J51_25970)	clpX	5658804..5660090 (+)	1287	WP_030159377.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AB5J51_RS25935 (AB5J51_25975)	-	5660257..5660529 (+)	273	WP_369778759.1	hypothetical protein	-
AB5J51_RS25940 (AB5J51_25980)	-	5660591..5661514 (-)	924	WP_369778760.1	hypothetical protein	-
AB5J51_RS25945 (AB5J51_25985)	-	5661644..5664265 (+)	2622	WP_136224868.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46925.81 Da
• Isoelectric Point: 4.7271

>NTDB_id=927672 AB5J51_RS25930 WP_030159377.1 5658804..5660090(+) (clpX) [Streptomyces sp. R33]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
SDVVRSNVNPTLVPRIVPKDQGPQEKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=927672 AB5J51_RS25930 WP_030159377.1 5658804..5660090(+) (clpX) [Streptomyces sp. R33]
GTGGCACGCATCGGTGACGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGACCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAGGAGCTCGCCGAGACCT
CCGAGGTCCGGTGGGAGGAACTCCCCAAGCCTCGTGAGATCTACGAGTTCCTGGAGAGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCCCTCTCGGTGGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGCGAGAACGGCGGTGCGCAGGGCCG
GGACGACGCGATCGAGCTCGCGAAGTCCAACATCCTGCTGCTGGGCCCGACGGGCTCCGGCAAGACGCTCCTCGCCCAGA
CGCTCGCGCGCATGCTGAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGGTACGTCGGCGAGGAC
GTCGAGAACATCTTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACCCGCGATGTGAGCGGCGAGGGCGTCCAGCAGGCCC
TCCTGAAGATCCTGGAAGGCACGACCGCCTCCGTCCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGCGCCTTCGCCGGCCTCGAGAAGATCATCGAGTCGCGTGCGGGCGC
CAAGGGCATCGGCTTCGGGGCGACGATCCGCTCGAAGCGCGAGATCGAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCGGAGTTCATCGGCCGTCTGCCGGTCATCACCTCGGTGCACAACCTGGACCGC
GAGGCGCTGCTGCAGATCCTGGTGGAGCCGCGGAACGCGCTGGTGAAGCAGTACCAGCGGCTGTTCGAACTCGACGGCGT
CGAGCTGGACTTCGAGCGCGAGGCGCTCGAGGCCATCGCGGACCAGGCGATCCTCCGCCAGACGGGCGCGCGCGGGCTGC
GCGCCATCATGGAGGAGGTCCTGATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACC
TCGGACGTGGTCCGCTCGAACGTCAACCCGACGCTGGTCCCCCGCATCGTCCCGAAGGACCAGGGCCCGCAGGAGAAGTC
GGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

3D structure

• AlphaFold DB: A0A5J6JHR3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.682	93.925	0.598
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.015	96.028	0.519