Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J51_RS25920 Genome accession   NZ_CP165727
Coordinates   5657275..5657892 (+) Length   205 a.a.
NCBI ID   WP_053786842.1    Uniprot ID   -
Organism   Streptomyces sp. R33     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5652275..5662892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J51_RS25890 (AB5J51_25930) - 5653471..5653935 (+) 465 WP_136224872.1 HD domain-containing protein -
  AB5J51_RS25895 (AB5J51_25935) - 5654112..5654306 (+) 195 WP_030297273.1 hypothetical protein -
  AB5J51_RS25900 (AB5J51_25940) - 5654659..5654994 (+) 336 WP_369778757.1 hypothetical protein -
  AB5J51_RS25915 (AB5J51_25955) tig 5655557..5656954 (+) 1398 WP_369778758.1 trigger factor -
  AB5J51_RS25920 (AB5J51_25960) clpP 5657275..5657892 (+) 618 WP_053786842.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J51_RS25925 (AB5J51_25965) clpP 5657979..5658650 (+) 672 WP_030297267.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J51_RS25930 (AB5J51_25970) clpX 5658804..5660090 (+) 1287 WP_030159377.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AB5J51_RS25935 (AB5J51_25975) - 5660257..5660529 (+) 273 WP_369778759.1 hypothetical protein -
  AB5J51_RS25940 (AB5J51_25980) - 5660591..5661514 (-) 924 WP_369778760.1 hypothetical protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21669.60 Da        Isoelectric Point: 4.6648

>NTDB_id=927670 AB5J51_RS25920 WP_053786842.1 5657275..5657892(+) (clpP) [Streptomyces sp. R33]
MTNLKPYAAGEPSIGGGLGDHVYNRLLGERIIFLGQQVDDDIANKITAQLLLLAAEPEKDIYLYINSPGGSVTAGMAVYD
TMQYIPNDVVTIGMGMAASMGQFLLTGGAPGKRFALPNTDILMHQGSAGIGGTASDIKIQAQYLLRTKQRMAEITAHHSG
QTVEAIIRDGDRDRWFTAEEAKDYGLIDEIISAASLVPGGGGTGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=927670 AB5J51_RS25920 WP_053786842.1 5657275..5657892(+) (clpP) [Streptomyces sp. R33]
GTGACGAATCTGAAGCCTTACGCCGCGGGTGAGCCGTCCATCGGTGGCGGCCTCGGCGACCATGTCTACAACCGGCTGCT
CGGCGAGCGCATCATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCCAACAAGATCACGGCGCAGCTCCTCCTCCTGG
CCGCGGAGCCGGAGAAGGACATCTACCTGTACATCAACAGCCCGGGCGGCTCGGTGACGGCGGGCATGGCGGTCTACGAC
ACCATGCAGTACATCCCGAACGACGTCGTCACCATCGGCATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTCACCGG
CGGCGCCCCGGGCAAGCGCTTCGCGCTCCCGAACACCGACATCCTGATGCACCAGGGTTCCGCCGGCATCGGTGGCACCG
CCTCGGACATCAAGATCCAGGCCCAGTACCTGCTGCGCACGAAGCAGCGCATGGCCGAGATCACCGCCCACCACTCCGGC
CAGACCGTGGAGGCGATCATCCGCGACGGCGACCGCGACCGCTGGTTCACCGCGGAGGAGGCCAAGGATTACGGCCTCAT
CGACGAGATCATCTCCGCCGCGTCGCTGGTCCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.356

93.171

0.488
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.579

92.683

0.478
  clpP Lactococcus lactis subsp. cremoris KW2

49.735

92.195

0.459
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.206

92.195

0.454
  clpP Streptococcus mutans UA159

51.124

86.829

0.444
  clpP Streptococcus pneumoniae TIGR4

50

86.829

0.434
  clpP Streptococcus pneumoniae Rx1

50

86.829

0.434
  clpP Streptococcus pneumoniae D39

50

86.829

0.434
  clpP Streptococcus pneumoniae R6

50

86.829

0.434
  clpP Streptococcus pyogenes MGAS315

49.438

86.829

0.429
  clpP Streptococcus pyogenes JRS4

49.438

86.829

0.429
  clpP Streptococcus thermophilus LMG 18311

48.876

86.829

0.424
  clpP Streptococcus thermophilus LMD-9

48.876

86.829

0.424