Detailed information NTG0927581

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: VP466_RS13960
• Genome accession: NZ_CP142895
• Coordinates: 2909120..2909821 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594589.1
• Uniprot ID: A0A9P3CZ31
• Organism: Acinetobacter baumannii strain B20AB10
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2904120..2914821

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VP466_RS13930 (VP466_13960)	-	2904426..2904869 (-)	444	WP_001246675.1	SRPBCC family protein	-
VP466_RS13935 (VP466_13965)	tadA	2904939..2905442 (-)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
VP466_RS13940 (VP466_13970)	-	2905449..2906573 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
VP466_RS13945 (VP466_13975)	ung	2906570..2907283 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
VP466_RS13950 (VP466_13980)	-	2907334..2907930 (-)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
VP466_RS13955 (VP466_13985)	gspK	2908161..2909120 (-)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
VP466_RS13960 (VP466_13990)	xcpW	2909120..2909821 (-)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
VP466_RS13965 (VP466_13995)	xcpV	2909821..2910201 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
VP466_RS13970 (VP466_14000)	-	2910191..2910745 (-)	555	WP_000841373.1	type II secretion system protein	-
VP466_RS13975 (VP466_14005)	-	2910755..2911363 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
VP466_RS13980 (VP466_14010)	-	2911401..2912174 (-)	774	WP_000497298.1	TatD family hydrolase	-
VP466_RS13985 (VP466_14015)	-	2912192..2912533 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
VP466_RS13990 (VP466_14020)	-	2912545..2913525 (-)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
VP466_RS13995 (VP466_14025)	kdsB	2913537..2914298 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26639.58 Da
• Isoelectric Point: 9.3468

>NTDB_id=927581 VP466_RS13960 WP_000594589.1 2909120..2909821(-) (xcpW) [Acinetobacter baumannii strain B20AB10]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=927581 VP466_RS13960 WP_000594589.1 2909120..2909821(-) (xcpW) [Acinetobacter baumannii strain B20AB10]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996