Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | VOI35_RS03270 | Genome accession | NZ_CP142685 |
| Coordinates | 691901..692338 (-) | Length | 145 a.a. |
| NCBI ID | WP_407276782.1 | Uniprot ID | - |
| Organism | Halothiobacillus sp. DCM-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 686901..697338
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VOI35_RS03260 (VOI35_03250) | - | 687705..689690 (-) | 1986 | WP_407276468.1 | tetratricopeptide repeat protein | - |
| VOI35_RS03265 (VOI35_03255) | - | 689693..691702 (-) | 2010 | WP_407276469.1 | tetratricopeptide repeat protein | - |
| VOI35_RS03270 (VOI35_03260) | pilE | 691901..692338 (-) | 438 | WP_407276782.1 | pilin | Machinery gene |
| VOI35_RS03275 (VOI35_03265) | - | 693437..693787 (-) | 351 | WP_407276470.1 | endonuclease domain-containing protein | - |
| VOI35_RS03280 (VOI35_03270) | - | 694212..695195 (-) | 984 | WP_407276471.1 | peptidylprolyl isomerase | - |
| VOI35_RS03285 (VOI35_03275) | - | 695225..695533 (-) | 309 | WP_407276472.1 | YciI family protein | - |
| VOI35_RS03290 (VOI35_03280) | - | 695544..696131 (-) | 588 | WP_407276473.1 | septation protein A | - |
| VOI35_RS03295 (VOI35_03285) | - | 696281..696910 (+) | 630 | WP_407276474.1 | L-threonylcarbamoyladenylate synthase | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 15004.27 Da Isoelectric Point: 9.2934
>NTDB_id=926411 VOI35_RS03270 WP_407276782.1 691901..692338(-) (pilE) [Halothiobacillus sp. DCM-1]
MSKTVQKGFTLIELMIVIAIIGILAAIAIPAYQDYTIRAQVSEGLSLADGLKTPSVEYYTNTGNWPTNTTTGFLAATAYN
GNYVKSITLSGGKMTVAYGNKSNTAITSSVLVLSAATTGGGTISFTCGTSAGTTILAKYLPAVCR
MSKTVQKGFTLIELMIVIAIIGILAAIAIPAYQDYTIRAQVSEGLSLADGLKTPSVEYYTNTGNWPTNTTTGFLAATAYN
GNYVKSITLSGGKMTVAYGNKSNTAITSSVLVLSAATTGGGTISFTCGTSAGTTILAKYLPAVCR
Nucleotide
Download Length: 438 bp
>NTDB_id=926411 VOI35_RS03270 WP_407276782.1 691901..692338(-) (pilE) [Halothiobacillus sp. DCM-1]
ATGAGCAAAACCGTTCAAAAGGGTTTCACCCTGATCGAATTGATGATCGTGATCGCGATCATCGGTATCCTGGCCGCCAT
TGCCATTCCGGCGTATCAGGATTACACCATCCGTGCGCAAGTTTCTGAAGGTCTGAGCTTAGCAGATGGCCTTAAGACTC
CCTCTGTCGAGTATTACACCAATACCGGCAACTGGCCTACCAATACCACTACAGGCTTCTTAGCCGCTACAGCCTACAAT
GGCAACTATGTTAAGAGCATCACTCTTAGCGGCGGTAAAATGACTGTGGCCTACGGTAACAAATCCAACACCGCAATCAC
ATCATCTGTTTTGGTACTCAGTGCCGCAACCACTGGCGGCGGGACGATTTCTTTCACTTGTGGCACTTCTGCTGGCACAA
CTATTCTCGCCAAATACTTACCTGCGGTTTGCCGTTAA
ATGAGCAAAACCGTTCAAAAGGGTTTCACCCTGATCGAATTGATGATCGTGATCGCGATCATCGGTATCCTGGCCGCCAT
TGCCATTCCGGCGTATCAGGATTACACCATCCGTGCGCAAGTTTCTGAAGGTCTGAGCTTAGCAGATGGCCTTAAGACTC
CCTCTGTCGAGTATTACACCAATACCGGCAACTGGCCTACCAATACCACTACAGGCTTCTTAGCCGCTACAGCCTACAAT
GGCAACTATGTTAAGAGCATCACTCTTAGCGGCGGTAAAATGACTGTGGCCTACGGTAACAAATCCAACACCGCAATCAC
ATCATCTGTTTTGGTACTCAGTGCCGCAACCACTGGCGGCGGGACGATTTCTTTCACTTGTGGCACTTCTGCTGGCACAA
CTATTCTCGCCAAATACTTACCTGCGGTTTGCCGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
36.788 |
100 |
0.49 |
| pilE | Neisseria gonorrhoeae MS11 |
44.304 |
100 |
0.483 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
44.586 |
100 |
0.483 |
| pilA2 | Legionella pneumophila str. Paris |
48.592 |
97.931 |
0.476 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
40.719 |
100 |
0.469 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
47.887 |
97.931 |
0.469 |
| pilA/pilA1 | Eikenella corrodens VA1 |
40.881 |
100 |
0.448 |
| pilA | Acinetobacter baumannii strain A118 |
41.912 |
93.793 |
0.393 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
36.184 |
100 |
0.379 |