Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J54_RS13970 Genome accession   NZ_CP163444
Coordinates   3016892..3017509 (-) Length   205 a.a.
NCBI ID   WP_369144238.1    Uniprot ID   -
Organism   Streptomyces sp. R44     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3011892..3022509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J54_RS13955 (AB5J54_13955) - 3013683..3014636 (+) 954 WP_369144237.1 hypothetical protein -
  AB5J54_RS13960 (AB5J54_13960) clpX 3014706..3015989 (-) 1284 WP_015033605.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AB5J54_RS13965 (AB5J54_13965) clpP 3016164..3016826 (-) 663 WP_030684990.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J54_RS13970 (AB5J54_13970) clpP 3016892..3017509 (-) 618 WP_369144238.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J54_RS13975 (AB5J54_13975) tig 3017750..3019138 (-) 1389 WP_369144239.1 trigger factor -
  AB5J54_RS13990 (AB5J54_13990) - 3019752..3021317 (+) 1566 WP_369144240.1 hypothetical protein -
  AB5J54_RS13995 (AB5J54_13995) - 3021391..3021585 (-) 195 WP_041129234.1 hypothetical protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21722.73 Da        Isoelectric Point: 4.8365

>NTDB_id=925612 AB5J54_RS13970 WP_369144238.1 3016892..3017509(-) (clpP) [Streptomyces sp. R44]
MTNLKPYAAGEPSIGGGLGDHVYNRLLGERIIFLGQQVDDEIANKITAQMLLLAAEPEKDIFLYINSPGGSVTAGMAVYD
TMQFIPNDVVTIGMGMAASMGQFLLTAGTPGKRFALPNTDILMHQGSAGIGGTASDIKIQAEYLLRTKKRMAEITAHHSG
QTVEAIIRDGDRDRWFTAEEAKEYGLIDDIITHAAGVPGGGGTGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=925612 AB5J54_RS13970 WP_369144238.1 3016892..3017509(-) (clpP) [Streptomyces sp. R44]
GTGACGAATCTGAAGCCTTACGCCGCGGGTGAGCCGTCCATCGGTGGCGGCCTCGGCGACCATGTCTACAACCGGCTGCT
CGGCGAGCGGATCATCTTCCTCGGCCAGCAGGTCGACGACGAGATCGCCAACAAGATCACCGCGCAGATGCTCCTCCTGG
CCGCCGAGCCGGAGAAGGACATCTTCCTGTACATCAACAGCCCCGGCGGCTCGGTGACGGCCGGCATGGCGGTCTACGAC
ACCATGCAGTTCATCCCGAACGACGTCGTCACCATCGGCATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTCACCGC
CGGCACCCCCGGCAAGCGCTTCGCGCTGCCGAACACCGACATCCTGATGCACCAGGGCTCCGCCGGCATCGGCGGCACCG
CCTCCGACATCAAGATCCAGGCCGAGTACCTCCTGCGCACCAAGAAGCGCATGGCCGAGATCACCGCGCACCACTCCGGC
CAGACCGTCGAGGCGATCATCCGCGACGGCGACCGCGACCGCTGGTTCACCGCGGAGGAGGCCAAGGAGTACGGCCTCAT
CGACGACATCATCACGCACGCCGCGGGTGTTCCGGGCGGCGGCGGCACGGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

54.167

93.659

0.507
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.526

92.683

0.468
  clpP Lactococcus lactis subsp. cremoris KW2

50.538

90.732

0.459
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50

90.732

0.454
  clpP Streptococcus mutans UA159

50.857

85.366

0.434
  clpP Streptococcus thermophilus LMD-9

50.286

85.366

0.429
  clpP Streptococcus thermophilus LMG 18311

50.286

85.366

0.429
  clpP Streptococcus pyogenes JRS4

50.289

84.39

0.424
  clpP Streptococcus pyogenes MGAS315

50.289

84.39

0.424
  clpP Streptococcus pneumoniae Rx1

49.143

85.366

0.42
  clpP Streptococcus pneumoniae D39

49.143

85.366

0.42
  clpP Streptococcus pneumoniae R6

49.143

85.366

0.42
  clpP Streptococcus pneumoniae TIGR4

49.143

85.366

0.42