Detailed information NTG0925610

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: AB5J54_RS13960
• Genome accession: NZ_CP163444
• Coordinates: 3014706..3015989 (-)
• Length: 427 a.a.
• NCBI ID: WP_015033605.1
• Uniprot ID: A0ABV3CXR2
• Organism: Streptomyces sp. R44
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3009706..3020989

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J54_RS13950 (AB5J54_13950)	-	3010923..3013544 (-)	2622	WP_369144236.1	valine--tRNA ligase	-
AB5J54_RS13955 (AB5J54_13955)	-	3013683..3014636 (+)	954	WP_369144237.1	hypothetical protein	-
AB5J54_RS13960 (AB5J54_13960)	clpX	3014706..3015989 (-)	1284	WP_015033605.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AB5J54_RS13965 (AB5J54_13965)	clpP	3016164..3016826 (-)	663	WP_030684990.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J54_RS13970 (AB5J54_13970)	clpP	3016892..3017509 (-)	618	WP_369144238.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J54_RS13975 (AB5J54_13975)	tig	3017750..3019138 (-)	1389	WP_369144239.1	trigger factor	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 46743.58 Da
• Isoelectric Point: 4.8738

>NTDB_id=925610 AB5J54_RS13960 WP_015033605.1 3014706..3015989(-) (clpX) [Streptomyces sp. R44]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFDRPALEAIADQAILRGTGARGLRAIMEEVLQSVMYEVPSRKDVARVVIT
ADVVRNNVNPTLVPRIVKNDGRHEKSA

Nucleotide

• Length: 1284 bp

>NTDB_id=925610 AB5J54_RS13960 WP_015033605.1 3014706..3015989(-) (clpX) [Streptomyces sp. R44]
GTGGCACGCATCGGTGATGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCGGGACCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACGA
GCGAGGTGCGGTGGGAGGAACTCCCCAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGGTACGTCGTCGGGCAGGAGCCC
GCGAAGAAGGCCCTCTCGGTCGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGCGAGAACGGCGGCGCGCAGGGCCG
TGACGACGCCATCGAACTGGCGAAGTCCAACATTCTGCTGCTGGGTCCCACGGGTTCGGGCAAGACGCTCCTGGCCCAGA
CCCTGGCCCGCATGCTCAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGCTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGTAAGAGCGAAAACCCGTCGATCACGCGTGACGTGAGCGGTGAGGGCGTGCAGCAGGCCC
TCCTGAAGATCCTGGAGGGCACGACCGCCTCCGTCCCGCCGCAGGGCGGCCGGAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGCGCGTTCGCCGGCCTGGAGAAGATCATCGAGTCGCGGGCGGGCGC
CAAGGGCATCGGCTTCGGGGCGACCATCCGCTCCAAGCGCGAGATCGAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGTCTCCCCGTGCTCACCTCCGTCCACAACCTGGACCGC
GAGGCGCTCCTCCAGATCCTGGTCGAGCCGCGCAACGCGCTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAACTGGACTTCGACCGCCCGGCCCTGGAGGCCATCGCCGACCAGGCGATCCTCCGCGGCACCGGCGCGCGCGGCCTGC
GCGCCATCATGGAGGAGGTCCTCCAGTCGGTCATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACG
GCCGACGTCGTCCGCAACAACGTCAACCCGACGCTGGTCCCGCGGATCGTGAAGAACGACGGCAGGCACGAGAAGTCGGC
CTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.682	94.145	0.6
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.528	96.253	0.515