Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J54_RS13965 Genome accession   NZ_CP163444
Coordinates   3016164..3016826 (-) Length   220 a.a.
NCBI ID   WP_030684990.1    Uniprot ID   A0A0B5I6M0
Organism   Streptomyces sp. R44     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3011164..3021826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J54_RS13955 (AB5J54_13955) - 3013683..3014636 (+) 954 WP_369144237.1 hypothetical protein -
  AB5J54_RS13960 (AB5J54_13960) clpX 3014706..3015989 (-) 1284 WP_015033605.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AB5J54_RS13965 (AB5J54_13965) clpP 3016164..3016826 (-) 663 WP_030684990.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J54_RS13970 (AB5J54_13970) clpP 3016892..3017509 (-) 618 WP_369144238.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J54_RS13975 (AB5J54_13975) tig 3017750..3019138 (-) 1389 WP_369144239.1 trigger factor -
  AB5J54_RS13990 (AB5J54_13990) - 3019752..3021317 (+) 1566 WP_369144240.1 hypothetical protein -
  AB5J54_RS13995 (AB5J54_13995) - 3021391..3021585 (-) 195 WP_041129234.1 hypothetical protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24127.42 Da        Isoelectric Point: 4.6079

>NTDB_id=925611 AB5J54_RS13965 WP_030684990.1 3016164..3016826(-) (clpP) [Streptomyces sp. R44]
MQNNLSPSGLYTGAPMDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI
YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDLEIAAN
EILRMRSQLEEMLAKHSSTPIEKIRDDIERDKILTAEDALAYGLIDQIVSTRKSTASAER

Nucleotide


Download         Length: 663 bp        

>NTDB_id=925611 AB5J54_RS13965 WP_030684990.1 3016164..3016826(-) (clpP) [Streptomyces sp. R44]
ATGCAGAACAACCTCTCCCCGAGCGGCCTCTACACCGGCGCGCCGATGGACAACCGCTACGTCGTGCCGCGCTTCGTCGA
GCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGATCTTCCTCGGCGTGCAGA
TCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGCGACATCTCGATC
TACATCAACAGCCCCGGCGGCTCCTTCACCGCCCTCACGGCCATCTACGACACGATGCAGTTCGTGAAGCCCGACATCCA
GACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCCGGCACCCCCGGCAAGCGGATGGCCCTGC
CGAACGCCCGTGTGCTGATCCACCAGCCCTCCGGCGGCACCGGCCGTGAGCAGCTCTCCGACCTGGAGATCGCGGCCAAC
GAGATCCTGCGCATGCGCAGCCAGCTCGAAGAGATGCTGGCCAAGCACTCCTCGACGCCGATCGAGAAGATCCGCGACGA
CATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCCCTGGCGTACGGCCTGATCGACCAGATCGTCTCCACCCGCAAGA
GCACGGCCTCCGCCGAGCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(31-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B5I6M0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

86.364

0.45
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

85.455

0.423
  clpP Streptococcus pyogenes MGAS315

46.842

86.364

0.405
  clpP Streptococcus pyogenes JRS4

46.842

86.364

0.405
  clpP Streptococcus thermophilus LMD-9

45.876

88.182

0.405
  clpP Streptococcus thermophilus LMG 18311

45.876

88.182

0.405
  clpP Streptococcus mutans UA159

46.316

86.364

0.4
  clpP Lactococcus lactis subsp. cremoris KW2

46.073

86.818

0.4
  clpP Streptococcus pneumoniae R6

45.078

87.727

0.395
  clpP Streptococcus pneumoniae TIGR4

45.078

87.727

0.395
  clpP Streptococcus pneumoniae D39

45.078

87.727

0.395
  clpP Streptococcus pneumoniae Rx1

45.078

87.727

0.395
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

86.818

0.391