NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	AB5J53_RS17440	Genome accession	NZ_CP163443
Coordinates	3770801..3771409 (-)	Length	202 a.a.
NCBI ID	WP_362018419.1	Uniprot ID	-
Organism	Streptomyces sp. R41
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3765801..3776409

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J53_RS17425 (AB5J53_17425)	-	3767086..3768027 (+)	942	WP_369246573.1	hypothetical protein	-
AB5J53_RS17430 (AB5J53_17430)	clpX	3768555..3769841 (-)	1287	WP_189185069.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AB5J53_RS17435 (AB5J53_17435)	clpP	3770002..3770682 (-)	681	WP_369246574.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J53_RS17440 (AB5J53_17440)	clpP	3770801..3771409 (-)	609	WP_362018419.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J53_RS17445 (AB5J53_17445)	tig	3771832..3773232 (-)	1401	WP_369246575.1	trigger factor	-
AB5J53_RS17460 (AB5J53_17460)	-	3773955..3774653 (-)	699	WP_369246576.1	SDR family NAD(P)-dependent oxidoreductase	-
AB5J53_RS17465 (AB5J53_17465)	-	3774823..3775143 (+)	321	WP_369252290.1	winged helix-turn-helix transcriptional regulator	-
AB5J53_RS17470 (AB5J53_17470)	-	3775316..3775510 (-)	195	WP_016435177.1	hypothetical protein	-

Sequence

Protein

Download Length: 202 a.a. Molecular weight: 21366.30 Da Isoelectric Point: 4.6663

                                >NTDB_id=925517 AB5J53_RS17440 WP_362018419.1 3770801..3771409(-) (clpP) [Streptomyces sp. R41]

MPSAAGDPSIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLASDPDKDIYLYINSPGGSITAGMAIYDTMQY

IKNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVE

QITRDSDRDRWFDPIEAKEYGLIDDIMPTAAGMPGGGGTGAA

Nucleotide

Download Length: 609 bp

                                >NTDB_id=925517 AB5J53_RS17440 WP_362018419.1 3770801..3771409(-) (clpP) [Streptomyces sp. R41]

ATGCCCTCCGCCGCCGGCGACCCCTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGAT

CATCTTCCTCGGCCAGGCGGTCGACGATGACATCGCCAACAAGATCACGGCGCAGCTGCTGCTCCTTGCTTCCGACCCGG

ACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGATCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTAC

ATCAAGAACGACGTGGTGACCATCGCCATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCAGCGCCGGCACCCCCGG

CAAGCGCTTCGCCCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTCGCCGGCTCCGCGTCGGACATCA

AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCGGAGCTGACCTCCTTCCACACCGGACAGACGGTCGAG

CAGATCACTCGTGACTCGGACCGCGACCGCTGGTTCGACCCGATCGAGGCCAAGGAGTACGGCCTCATCGACGACATCAT

GCCCACCGCTGCCGGTATGCCGGGCGGCGGCGGCACCGGGGCGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	59.064	84.653	0.5
clpP	Lactococcus lactis subsp. cremoris KW2	55.491	85.644	0.475
clpP	Streptococcus mutans UA159	55.491	85.644	0.475
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.598	86.139	0.47
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.913	85.644	0.47
clpP	Streptococcus pyogenes MGAS315	52.601	85.644	0.45
clpP	Streptococcus pyogenes JRS4	52.601	85.644	0.45
clpP	Streptococcus thermophilus LMG 18311	52.023	85.644	0.446
clpP	Streptococcus thermophilus LMD-9	52.023	85.644	0.446
clpP	Streptococcus pneumoniae Rx1	51.445	85.644	0.441
clpP	Streptococcus pneumoniae D39	51.445	85.644	0.441
clpP	Streptococcus pneumoniae R6	51.445	85.644	0.441
clpP	Streptococcus pneumoniae TIGR4	51.445	85.644	0.441

Detailed information NTG0925517