Detailed information NTG0925515

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: AB5J53_RS17430
• Genome accession: NZ_CP163443
• Coordinates: 3768555..3769841 (-)
• Length: 428 a.a.
• NCBI ID: WP_189185069.1
• Uniprot ID: -
• Organism: Streptomyces sp. R41
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3763555..3774841

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J53_RS17420 (AB5J53_17420)	-	3764325..3766949 (-)	2625	WP_369246572.1	valine--tRNA ligase	-
AB5J53_RS17425 (AB5J53_17425)	-	3767086..3768027 (+)	942	WP_369246573.1	hypothetical protein	-
AB5J53_RS17430 (AB5J53_17430)	clpX	3768555..3769841 (-)	1287	WP_189185069.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AB5J53_RS17435 (AB5J53_17435)	clpP	3770002..3770682 (-)	681	WP_369246574.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J53_RS17440 (AB5J53_17440)	clpP	3770801..3771409 (-)	609	WP_362018419.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J53_RS17445 (AB5J53_17445)	tig	3771832..3773232 (-)	1401	WP_369246575.1	trigger factor	-
AB5J53_RS17460 (AB5J53_17460)	-	3773955..3774653 (-)	699	WP_369246576.1	SDR family NAD(P)-dependent oxidoreductase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46971.75 Da
• Isoelectric Point: 4.7809

>NTDB_id=925515 AB5J53_RS17430 WP_189185069.1 3768555..3769841(-) (clpX) [Streptomyces sp. R41]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQES
AKKALSVAVYNHYKRVQAGENSTGQNRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKLIESRAGAKGIGFGATIRSKRELESKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVHSNVNPTLIPRDARGRGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=925515 AB5J53_RS17430 WP_189185069.1 3768555..3769841(-) (clpX) [Streptomyces sp. R41]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGTGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAAGAGCTCGCGGAGACGA
GCGAGGTCCGCTGGGAGGAGCTCCCGAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGGTACGTGGTCGGCCAGGAGTCG
GCCAAGAAAGCTCTCTCGGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGCGAGAACAGCACGGGTCAAAATCG
CGACGACGCCATTGAATTGGCGAAGTCCAACATCCTGCTGCTGGGCCCCACGGGCTCCGGCAAGACACTGCTCGCCCAGA
CCCTGGCCCGCATGCTGAACGTGCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCTGGGTACGTGGGCGAGGAC
GTGGAGAACATCCTGCTCAAGCTCATTCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACGGGCATCATCTACATCGA
CGAGATCGACAAGGTGGCTCGTAAGAGCGAGAACCCGTCGATCACGCGAGATGTGTCGGGCGAGGGCGTCCAGCAGGCCC
TCCTCAAGATCCTCGAAGGCACGACGGCGTCGGTCCCGCCCCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGCGCCTTCGCGGGCCTGGAGAAGCTCATCGAATCCCGTGCCGGCGC
CAAGGGAATCGGCTTCGGGGCGACGATCCGCTCGAAGCGCGAGCTGGAGTCCAAGGACCAGTTCGAGGACGTCATGCCCG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGCCGCCTCCCGGTGATCACCTCGGTCCACAACCTGGACCGC
GAGGCCCTCCTCCAGATCCTGGTCGAGCCCCGCAACGCTCTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAACTGGACTTCGAGCGCGAGGCGCTGGAAGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCGCGCGGCCTGC
GCGCCATCATGGAGGAAGTCCTGATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTCGTCATCACC
GCGGACGTCGTCCACTCGAACGTGAACCCGACGCTGATTCCGCGGGATGCCCGCGGACGGGGCCCGGGCGAGCAGAAGAC
GGCGTAG

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.035	94.159	0.584
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.501	96.028	0.523